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Results: 1 to 20 of 84

1.

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks.

Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM.

Genome Biol. 2008;9 Suppl 2:S11. doi: 10.1186/gb-2008-9-s2-s11. Epub 2008 Sep 1.

PMID:
18834489
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Classification of protein-protein interaction full-text documents using text and citation network features.

Kolchinsky A, Abi-Haidar A, Kaur J, Hamed AA, Rocha LM.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):400-11. doi: 10.1109/TCBB.2010.55.

PMID:
20671313
[PubMed - indexed for MEDLINE]
3.

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12. doi: 10.1186/1471-2105-12-S8-S12. Erratum in: BMC Bioinformatics. 2012;13:180.

PMID:
22151823
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

PMID:
18834495
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.

PMID:
22151929
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Empirical investigations into full-text protein interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge.

Lan M, Su J.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):421-7. doi: 10.1109/TCBB.2010.49.

PMID:
20671314
[PubMed - indexed for MEDLINE]
8.

An Overview of BioCreative II.5.

Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

PMID:
20704011
[PubMed - indexed for MEDLINE]
9.

Mining physical protein-protein interactions from the literature.

Huang M, Ding S, Wang H, Zhu X.

Genome Biol. 2008;9 Suppl 2:S12. doi: 10.1186/gb-2008-9-s2-s12. Epub 2008 Sep 1.

PMID:
18834490
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Mining protein function from text using term-based support vector machines.

Rice SB, Nenadic G, Stapley BJ.

BMC Bioinformatics. 2005;6 Suppl 1:S22. Epub 2005 May 24.

PMID:
15960835
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The TREC 2004 genomics track categorization task: classifying full text biomedical documents.

Cohen AM, Hersh WR.

J Biomed Discov Collab. 2006 Mar 14;1:4.

PMID:
16722582
[PubMed]
Free PMC Article
12.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

PMID:
18834496
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Building a protein name dictionary from full text: a machine learning term extraction approach.

Shi L, Campagne F.

BMC Bioinformatics. 2005 Apr 7;6:88.

PMID:
15817129
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature.

Wang X, Rak R, Restificar A, Nobata C, Rupp CJ, Batista-Navarro RT, Nawaz R, Ananiadou S.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S11. doi: 10.1186/1471-2105-12-S8-S11.

PMID:
22151769
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Categorization of sentence types in medical abstracts.

McKnight L, Srinivasan P.

AMIA Annu Symp Proc. 2003:440-4.

PMID:
14728211
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Protein interaction sentence detection using multiple semantic kernels.

Polajnar T, Damoulas T, Girolami M.

J Biomed Semantics. 2011 May 14;2(1):1. doi: 10.1186/2041-1480-2-1.

PMID:
21569604
[PubMed]
Free PMC Article
17.

Improving classification in protein structure databases using text mining.

Koussounadis A, Redfern OC, Jones DT.

BMC Bioinformatics. 2009 May 5;10:129. doi: 10.1186/1471-2105-10-129.

PMID:
19416501
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Biomedical named entity recognition using two-phase model based on SVMs.

Lee KJ, Hwang YS, Kim S, Rim HC.

J Biomed Inform. 2004 Dec;37(6):436-47.

PMID:
15542017
[PubMed - indexed for MEDLINE]
Free Article
19.

Automatic document classification of biological literature.

Chen D, Müller HM, Sternberg PW.

BMC Bioinformatics. 2006 Aug 7;7:370.

PMID:
16893465
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.

PMID:
14871877
[PubMed - indexed for MEDLINE]
Free Article

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