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Results: 1 to 20 of 77

1.

Automating curation using a natural language processing pipeline.

Alex B, Grover C, Haddow B, Kabadjov M, Klein E, Matthews M, Tobin R, Wang X.

Genome Biol. 2008;9 Suppl 2:S10. doi: 10.1186/gb-2008-9-s2-s10. Epub 2008 Sep 1.

PMID:
18834488
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12. doi: 10.1186/1471-2105-12-S8-S12. Erratum in: BMC Bioinformatics. 2012;13:180.

PMID:
22151823
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

BioLMiner System: interaction normalization task and interaction pair task in the BioCreative II.5 challenge.

Chen Y, Liu F, Manderick B.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):428-41. doi: 10.1109/TCBB.2010.47.

PMID:
20671315
[PubMed - indexed for MEDLINE]
5.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases.

Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S8. doi: 10.1186/1471-2105-12-S8-S8.

PMID:
22151178
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Using rule-based natural language processing to improve disease normalization in biomedical text.

Kang N, Singh B, Afzal Z, van Mulligen EM, Kors JA.

J Am Med Inform Assoc. 2013 Sep-Oct;20(5):876-81. doi: 10.1136/amiajnl-2012-001173. Epub 2012 Oct 6.

PMID:
23043124
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

PMID:
18834495
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization.

Kuo CJ, Ling MH, Hsu CN.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S6. doi: 10.1186/1471-2105-12-S8-S6.

PMID:
22152021
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Feature generation and representations for protein-protein interaction classification.

Lan M, Tan CL, Su J.

J Biomed Inform. 2009 Oct;42(5):866-72. doi: 10.1016/j.jbi.2009.07.004. Epub 2009 Jul 16.

PMID:
19616641
[PubMed - indexed for MEDLINE]
Free Article
11.

Detection of interaction articles and experimental methods in biomedical literature.

Schneider G, Clematide S, Rinaldi F.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S13. doi: 10.1186/1471-2105-12-S8-S13.

PMID:
22151872
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Exploring species-based strategies for gene normalization.

Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71. doi: 10.1109/TCBB.2010.48.

PMID:
20671318
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Boosting performance of gene mention tagging system by hybrid methods.

Li L, Fan W, Huang D, Dang Y, Sun J.

J Biomed Inform. 2012 Feb;45(1):156-64. doi: 10.1016/j.jbi.2011.10.004. Epub 2011 Oct 28.

PMID:
22056694
[PubMed - indexed for MEDLINE]
Free Article
14.

Improving performance of natural language processing part-of-speech tagging on clinical narratives through domain adaptation.

Ferraro JP, Daumé H 3rd, Duvall SL, Chapman WW, Harkema H, Haug PJ.

J Am Med Inform Assoc. 2013 Sep-Oct;20(5):931-9. doi: 10.1136/amiajnl-2012-001453. Epub 2013 Mar 13.

PMID:
23486109
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction.

Santos C, Eggle D, States DJ.

Bioinformatics. 2005 Apr 15;21(8):1653-8. Epub 2004 Nov 25.

PMID:
15564295
[PubMed - indexed for MEDLINE]
Free Article
16.

Automatic categorization of diverse experimental information in the bioscience literature.

Fang R, Schindelman G, Van Auken K, Fernandes J, Chen W, Wang X, Davis P, Tuli MA, Marygold SJ, Millburn G, Matthews B, Zhang H, Brown N, Gelbart WM, Sternberg PW.

BMC Bioinformatics. 2012 Jan 26;13:16. doi: 10.1186/1471-2105-13-16.

PMID:
22280404
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature.

Kuo CJ, Ling MH, Lin KT, Hsu CN.

BMC Bioinformatics. 2009 Dec 3;10 Suppl 15:S7. doi: 10.1186/1471-2105-10-S15-S7.

PMID:
19958517
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A natural language processing (NLP) tool to assist in the curation of the laboratory Mouse Tumor Biology Database.

Xu H, Krupke D, Blake J, Friedman C.

AMIA Annu Symp Proc. 2006:1150.

PMID:
17238769
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

University of Turku in the BioNLP'11 Shared Task.

Björne J, Ginter F, Salakoski T.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S4. doi: 10.1186/1471-2105-13-S11-S4.

PMID:
22759458
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.

PMID:
18325104
[PubMed - indexed for MEDLINE]
Free PMC Article

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