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Results: 1 to 20 of 57

1.

Transcriptome content and dynamics at single-nucleotide resolution.

Cloonan N, Grimmond SM.

Genome Biol. 2008;9(9):234. doi: 10.1186/gb-2008-9-9-234. Epub 2008 Sep 18. Review.

PMID:
18828881
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Stem cell transcriptome profiling via massive-scale mRNA sequencing.

Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM.

Nat Methods. 2008 Jul;5(7):613-9. doi: 10.1038/nmeth.1223. Epub 2008 May 30.

PMID:
18516046
[PubMed - indexed for MEDLINE]
3.

RNA-Seq: a method for comprehensive transcriptome analysis.

Nagalakshmi U, Waern K, Snyder M.

Curr Protoc Mol Biol. 2010 Jan;Chapter 4:Unit 4.11.1-13. doi: 10.1002/0471142727.mb0411s89.

PMID:
20069539
[PubMed - indexed for MEDLINE]
4.

RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing.

Wilhelm BT, Landry JR.

Methods. 2009 Jul;48(3):249-57. doi: 10.1016/j.ymeth.2009.03.016. Epub 2009 Mar 29.

PMID:
19336255
[PubMed - indexed for MEDLINE]
5.

Next generation sequencing of microbial transcriptomes: challenges and opportunities.

van Vliet AH.

FEMS Microbiol Lett. 2010 Jan;302(1):1-7. doi: 10.1111/j.1574-6968.2009.01767.x. Epub 2009 Aug 21. Review.

PMID:
19735299
[PubMed - indexed for MEDLINE]
6.

Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes.

Blencowe BJ, Ahmad S, Lee LJ.

Genes Dev. 2009 Jun 15;23(12):1379-86. doi: 10.1101/gad.1788009. Review.

PMID:
19528315
[PubMed - indexed for MEDLINE]
Free Article
7.

Is sequencing enlightenment ending the dark age of the transcriptome?

Carninci P.

Nat Methods. 2009 Oct;6(10):711-13. No abstract available.

PMID:
19953680
[PubMed - indexed for MEDLINE]
8.

A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.

Hanriot L, Keime C, Gay N, Faure C, Dossat C, Wincker P, Scoté-Blachon C, Peyron C, Gandrillon O.

BMC Genomics. 2008 Sep 16;9:418. doi: 10.1186/1471-2164-9-418.

PMID:
18796152
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.

Morin R, Bainbridge M, Fejes A, Hirst M, Krzywinski M, Pugh T, McDonald H, Varhol R, Jones S, Marra M.

Biotechniques. 2008 Jul;45(1):81-94. doi: 10.2144/000112900.

PMID:
18611170
[PubMed - indexed for MEDLINE]
Free Article
10.

High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer.

Hashimoto S, Qu W, Ahsan B, Ogoshi K, Sasaki A, Nakatani Y, Lee Y, Ogawa M, Ametani A, Suzuki Y, Sugano S, Lee CC, Nutter RC, Morishita S, Matsushima K.

PLoS One. 2009;4(1):e4108. doi: 10.1371/journal.pone.0004108. Epub 2009 Jan 1.

PMID:
19119315
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods.

Sultan M, Dökel S, Amstislavskiy V, Wuttig D, Sültmann H, Lehrach H, Yaspo ML.

Biochem Biophys Res Commun. 2012 Jun 15;422(4):643-6. doi: 10.1016/j.bbrc.2012.05.043. Epub 2012 May 15.

PMID:
22609201
[PubMed - indexed for MEDLINE]
Free Article
12.

Deep sequencing of the zebrafish transcriptome response to mycobacterium infection.

Hegedus Z, Zakrzewska A, Agoston VC, Ordas A, Rácz P, Mink M, Spaink HP, Meijer AH.

Mol Immunol. 2009 Sep;46(15):2918-30. doi: 10.1016/j.molimm.2009.07.002. Epub 2009 Jul 24.

PMID:
19631987
[PubMed - indexed for MEDLINE]
13.

Estimating accuracy of RNA-Seq and microarrays with proteomics.

Fu X, Fu N, Guo S, Yan Z, Xu Y, Hu H, Menzel C, Chen W, Li Y, Zeng R, Khaitovich P.

BMC Genomics. 2009 Apr 16;10:161. doi: 10.1186/1471-2164-10-161.

PMID:
19371429
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Preparation and analysis of microRNA libraries using the Illumina massively parallel sequencing technology.

Morin RD, Zhao Y, Prabhu AL, Dhalla N, McDonald H, Pandoh P, Tam A, Zeng T, Hirst M, Marra M.

Methods Mol Biol. 2010;650:173-99. doi: 10.1007/978-1-60761-769-3_14.

PMID:
20686952
[PubMed - indexed for MEDLINE]
15.

Reading the code of single RNA molecules.

Müller S.

Angew Chem Int Ed Engl. 2010 Feb 8;49(7):1197-9. doi: 10.1002/anie.200906336. No abstract available.

PMID:
20077450
[PubMed - indexed for MEDLINE]
16.

Serial analysis of gene expression: probing transcriptomes for molecular targets.

Lal A, Sui IM, Riggins GJ.

Curr Opin Mol Ther. 1999 Dec;1(6):720-6. Review.

PMID:
19629869
[PubMed - indexed for MEDLINE]
17.

Biases in Illumina transcriptome sequencing caused by random hexamer priming.

Hansen KD, Brenner SE, Dudoit S.

Nucleic Acids Res. 2010 Jul;38(12):e131. doi: 10.1093/nar/gkq224. Epub 2010 Apr 14.

PMID:
20395217
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Global survey of genomic imprinting by transcriptome sequencing.

Babak T, Deveale B, Armour C, Raymond C, Cleary MA, van der Kooy D, Johnson JM, Lim LP.

Curr Biol. 2008 Nov 25;18(22):1735-41. doi: 10.1016/j.cub.2008.09.044.

PMID:
19026546
[PubMed - indexed for MEDLINE]
Free Article
19.

Complexities of gammaherpesvirus transcription revealed by microarrays and RNAseq.

Krug LT.

Curr Opin Virol. 2013 Jun;3(3):276-84. doi: 10.1016/j.coviro.2013.04.006. Epub 2013 May 16. Review.

PMID:
23684513
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution.

Shah SP, Morin RD, Khattra J, Prentice L, Pugh T, Burleigh A, Delaney A, Gelmon K, Guliany R, Senz J, Steidl C, Holt RA, Jones S, Sun M, Leung G, Moore R, Severson T, Taylor GA, Teschendorff AE, Tse K, Turashvili G, Varhol R, Warren RL, Watson P, Zhao Y, Caldas C, Huntsman D, Hirst M, Marra MA, Aparicio S.

Nature. 2009 Oct 8;461(7265):809-13. doi: 10.1038/nature08489.

PMID:
19812674
[PubMed - indexed for MEDLINE]

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