Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 45

1.

NetGrep: fast network schema searches in interactomes.

Banks E, Nabieva E, Peterson R, Singh M.

Genome Biol. 2008;9(9):R138. doi: 10.1186/gb-2008-9-9-r138. Epub 2008 Sep 18.

PMID:
18801179
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

SPIDer: Saccharomyces protein-protein interaction database.

Wu X, Zhu L, Guo J, Fu C, Zhou H, Dong D, Li Z, Zhang DY, Lin K.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S16.

PMID:
17254300
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Organization of physical interactomes as uncovered by network schemas.

Banks E, Nabieva E, Chazelle B, Singh M.

PLoS Comput Biol. 2008 Oct;4(10):e1000203. doi: 10.1371/journal.pcbi.1000203. Epub 2008 Oct 24.

PMID:
18949022
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Domain-oriented edge-based alignment of protein interaction networks.

Guo X, Hartemink AJ.

Bioinformatics. 2009 Jun 15;25(12):i240-6. doi: 10.1093/bioinformatics/btp202.

PMID:
19477994
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

QNet: a tool for querying protein interaction networks.

Dost B, Shlomi T, Gupta N, Ruppin E, Bafna V, Sharan R.

J Comput Biol. 2008 Sep;15(7):913-25. doi: 10.1089/cmb.2007.0172.

PMID:
18707533
[PubMed - indexed for MEDLINE]
6.

Interaction networks: from protein functions to drug discovery. A review.

Chautard E, Thierry-Mieg N, Ricard-Blum S.

Pathol Biol (Paris). 2009 Jun;57(4):324-33. doi: 10.1016/j.patbio.2008.10.004. Epub 2008 Dec 13. Review.

PMID:
19070972
[PubMed - indexed for MEDLINE]
7.

A genomewide functional network for the laboratory mouse.

Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000165. doi: 10.1371/journal.pcbi.1000165.

PMID:
18818725
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

ConsensusPathDB--a database for integrating human functional interaction networks.

Kamburov A, Wierling C, Lehrach H, Herwig R.

Nucleic Acids Res. 2009 Jan;37(Database issue):D623-8. doi: 10.1093/nar/gkn698. Epub 2008 Oct 21.

PMID:
18940869
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Prediction of protein-protein interaction types using association rule based classification.

Park SH, Reyes JA, Gilbert DR, Kim JW, Kim S.

BMC Bioinformatics. 2009 Jan 28;10:36. doi: 10.1186/1471-2105-10-36.

PMID:
19173748
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Fast and accurate alignment of multiple protein networks.

Kalaev M, Bafna V, Sharan R.

J Comput Biol. 2009 Aug;16(8):989-99. doi: 10.1089/cmb.2009.0136.

PMID:
19624266
[PubMed - indexed for MEDLINE]
11.

Clustering algorithms for detecting functional modules in protein interaction networks.

Gao L, Sun PG, Song J.

J Bioinform Comput Biol. 2009 Feb;7(1):217-42.

PMID:
19226668
[PubMed - indexed for MEDLINE]
12.

Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network.

Shimizu K, Toh H.

J Mol Biol. 2009 Oct 9;392(5):1253-65. doi: 10.1016/j.jmb.2009.07.088. Epub 2009 Aug 3.

PMID:
19660471
[PubMed - indexed for MEDLINE]
13.

Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.

Del Mondo G, Eveillard D, Rusu I.

Bioinformatics. 2009 Apr 1;25(7):926-32. doi: 10.1093/bioinformatics/btp083. Epub 2009 Feb 17.

PMID:
19223451
[PubMed - indexed for MEDLINE]
Free Article
14.

PIG--the pathogen interaction gateway.

Driscoll T, Dyer MD, Murali TM, Sobral BW.

Nucleic Acids Res. 2009 Jan;37(Database issue):D647-50. doi: 10.1093/nar/gkn799. Epub 2008 Nov 4.

PMID:
18984614
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

Sardiu ME, Florens L, Washburn MP.

J Proteome Res. 2009 Jun;8(6):2944-52. doi: 10.1021/pr900073d.

PMID:
19317493
[PubMed - indexed for MEDLINE]
16.

The prediction of protein-protein interaction networks in rice blast fungus.

He F, Zhang Y, Chen H, Zhang Z, Peng YL.

BMC Genomics. 2008 Nov 2;9:519. doi: 10.1186/1471-2164-9-519.

PMID:
18976500
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A gene network simulator to assess reverse engineering algorithms.

Di Camillo B, Toffolo G, Cobelli C.

Ann N Y Acad Sci. 2009 Mar;1158:125-42. doi: 10.1111/j.1749-6632.2008.03756.x.

PMID:
19348638
[PubMed - indexed for MEDLINE]
18.

Modularity of cellular networks shows general center-periphery polarization.

Vinogradov AE.

Bioinformatics. 2008 Dec 15;24(24):2814-7. doi: 10.1093/bioinformatics/btn555. Epub 2008 Oct 25.

PMID:
18953046
[PubMed - indexed for MEDLINE]
Free Article
19.

Network Analysis Tools: from biological networks to clusters and pathways.

Brohée S, Faust K, Lima-Mendez G, Vanderstocken G, van Helden J.

Nat Protoc. 2008;3(10):1616-29. doi: 10.1038/nprot.2008.100.

PMID:
18802442
[PubMed - indexed for MEDLINE]
20.

Global alignment of protein-protein interaction networks by graph matching methods.

Zaslavskiy M, Bach F, Vert JP.

Bioinformatics. 2009 Jun 15;25(12):i259-67. doi: 10.1093/bioinformatics/btp196.

PMID:
19477997
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk