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Results: 1 to 20 of 103

1.

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis.

Chu VT, Gottardo R, Raftery AE, Bumgarner RE, Yeung KY.

Genome Biol. 2008;9(7):R118. doi: 10.1186/gb-2008-9-7-r118. Epub 2008 Jul 24.

PMID:
18652698
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

affylmGUI: a graphical user interface for linear modeling of single channel microarray data.

Wettenhall JM, Simpson KM, Satterley K, Smyth GK.

Bioinformatics. 2006 Apr 1;22(7):897-9. Epub 2006 Feb 2.

PMID:
16455752
[PubMed - indexed for MEDLINE]
Free Article
4.

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.

Sanges R, Cordero F, Calogero RA.

Bioinformatics. 2007 Dec 15;23(24):3406-8. Epub 2007 Sep 17.

PMID:
17875544
[PubMed - indexed for MEDLINE]
Free Article
5.

WebArray: an online platform for microarray data analysis.

Xia X, McClelland M, Wang Y.

BMC Bioinformatics. 2005 Dec 21;6:306.

PMID:
16371165
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

limmaGUI: a graphical user interface for linear modeling of microarray data.

Wettenhall JM, Smyth GK.

Bioinformatics. 2004 Dec 12;20(18):3705-6. Epub 2004 Aug 5.

PMID:
15297296
[PubMed - indexed for MEDLINE]
Free Article
7.

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.

Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W498-503.

PMID:
16845058
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

arrayQCplot: software for checking the quality of microarray data.

Lee EK, Yi SG, Park T.

Bioinformatics. 2006 Sep 15;22(18):2305-7. Epub 2006 Jul 24.

PMID:
16864592
[PubMed - indexed for MEDLINE]
Free Article
9.

Codelink: an R package for analysis of GE healthcare gene expression bioarrays.

Diez D, Alvarez R, Dopazo A.

Bioinformatics. 2007 May 1;23(9):1168-9. Epub 2007 Mar 7.

PMID:
17344240
[PubMed - indexed for MEDLINE]
Free Article
10.

IlluminaGUI: graphical user interface for analyzing gene expression data generated on the Illumina platform.

Schultze JL, Eggle D.

Bioinformatics. 2007 Jun 1;23(11):1431-3. Epub 2007 Mar 23.

PMID:
17384020
[PubMed - indexed for MEDLINE]
Free Article
11.

RNA-Seq analysis in MeV.

Howe EA, Sinha R, Schlauch D, Quackenbush J.

Bioinformatics. 2011 Nov 15;27(22):3209-10. doi: 10.1093/bioinformatics/btr490. Epub 2011 Oct 5.

PMID:
21976420
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Workflows for microarray data processing in the Kepler environment.

Stropp T, McPhillips T, Ludäscher B, Bieda M.

BMC Bioinformatics. 2012 May 17;13:102. doi: 10.1186/1471-2105-13-102.

PMID:
22594911
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

RReportGenerator: automatic reports from routine statistical analysis using R.

Raffelsberger W, Krause Y, Moulinier L, Kieffer D, Morand AL, Brino L, Poch O.

Bioinformatics. 2008 Jan 15;24(2):276-8. Epub 2007 Nov 24.

PMID:
18037684
[PubMed - indexed for MEDLINE]
Free Article
14.

MAGIC Tool: integrated microarray data analysis.

Heyer LJ, Moskowitz DZ, Abele JA, Karnik P, Choi D, Campbell AM, Oldham EE, Akin BK.

Bioinformatics. 2005 May 1;21(9):2114-5. Epub 2005 Jan 12.

PMID:
15647303
[PubMed - indexed for MEDLINE]
Free Article
15.

A framework for oligonucleotide microarray preprocessing.

Carvalho BS, Irizarry RA.

Bioinformatics. 2010 Oct 1;26(19):2363-7. doi: 10.1093/bioinformatics/btq431. Epub 2010 Aug 5.

PMID:
20688976
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Importing MAGE-ML format microarray data into BioConductor.

Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B.

Bioinformatics. 2004 Dec 12;20(18):3641-2. Epub 2004 Jul 15.

PMID:
15256416
[PubMed - indexed for MEDLINE]
Free Article
17.

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.

Bare JC, Shannon PT, Schmid AK, Baliga NS.

BMC Bioinformatics. 2007 Nov 19;8:456.

PMID:
18021453
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Goulphar: rapid access and expertise for standard two-color microarray normalization methods.

Lemoine S, Combes F, Servant N, Le Crom S.

BMC Bioinformatics. 2006 Oct 23;7:467.

PMID:
17059595
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

MADE4: an R package for multivariate analysis of gene expression data.

Culhane AC, Thioulouse J, Perrière G, Higgins DG.

Bioinformatics. 2005 Jun 1;21(11):2789-90. Epub 2005 Mar 29.

PMID:
15797915
[PubMed - indexed for MEDLINE]
Free Article
20.

JColorGrid: software for the visualization of biological measurements.

Joachimiak MP, Weisman JL, May BCh.

BMC Bioinformatics. 2006 Apr 27;7:225.

PMID:
16640789
[PubMed - indexed for MEDLINE]
Free PMC Article

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