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Results: 1 to 20 of 97

1.

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.

Laubinger S, Zeller G, Henz SR, Sachsenberg T, Widmer CK, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D.

Genome Biol. 2008;9(7):R112. doi: 10.1186/gb-2008-9-7-r112. Epub 2008 Jul 9.

PMID:
18613972
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays.

Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S.

Plant J. 2009 Jun;58(6):1068-82. doi: 10.1111/j.1365-313X.2009.03835.x. Epub 2009 Feb 13. Erratum in: Plant J. 2009 Dec;60(5):929.

PMID:
19222804
[PubMed - indexed for MEDLINE]
3.

Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.

Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M.

Plant J. 2009 Jan;57(1):184-94. doi: 10.1111/j.1365-313X.2008.03662.x. Epub 2008 Sep 19.

PMID:
18764924
[PubMed - indexed for MEDLINE]
4.

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.

Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman MR.

Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4453-8. Epub 2005 Mar 8.

PMID:
15755812
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Whole genome transcriptome polymorphisms in Arabidopsis thaliana.

Zhang X, Byrnes JK, Gal TS, Li WH, Borevitz JO.

Genome Biol. 2008;9(11):R165. doi: 10.1186/gb-2008-9-11-r165. Epub 2008 Nov 24.

PMID:
19025653
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Tiling array-driven elucidation of transcriptional structures based on maximum-likelihood and Markov models.

Toyoda T, Shinozaki K.

Plant J. 2005 Aug;43(4):611-21.

PMID:
16098113
[PubMed - indexed for MEDLINE]
7.

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR.

Cell. 2006 Sep 22;126(6):1189-201. Epub 2006 Aug 31.

PMID:
16949657
[PubMed - indexed for MEDLINE]
Free Article
8.

AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.

Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L.

Plant Physiol. 2010 Feb;152(2):487-99. doi: 10.1104/pp.109.150185. Epub 2009 Dec 23.

PMID:
20032078
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes.

Riaño-Pachón DM, Dreyer I, Mueller-Roeber B.

Plant J. 2005 Jul;43(2):205-12.

PMID:
15998307
[PubMed - indexed for MEDLINE]
10.

Alternative polyadenylation blooms.

Rosonina E, Manley JL.

Dev Cell. 2010 Feb 16;18(2):172-4. doi: 10.1016/j.devcel.2010.02.001.

PMID:
20159589
[PubMed - indexed for MEDLINE]
Free Article
11.

Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.

Eichner J, Zeller G, Laubinger S, Rätsch G.

BMC Bioinformatics. 2011 Feb 16;12:55. doi: 10.1186/1471-2105-12-55.

PMID:
21324185
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

Jiao Y, Ma L, Strickland E, Deng XW.

Plant Cell. 2005 Dec;17(12):3239-56. Epub 2005 Nov 11.

PMID:
16284311
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, Weigel D, Carter DE, Marchand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC, Ecker JR.

Science. 2003 Aug 1;301(5633):653-7. Erratum in: Science. 2003 Sep;301(5641):1849.

PMID:
12893945
[PubMed - indexed for MEDLINE]
Free Article
14.

Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing.

Meyers BC, Vu TH, Tej SS, Ghazal H, Matvienko M, Agrawal V, Ning J, Haudenschild CD.

Nat Biotechnol. 2004 Aug;22(8):1006-11. Epub 2004 Jul 11.

PMID:
15247925
[PubMed - indexed for MEDLINE]
15.

Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays.

Okamoto M, Tatematsu K, Matsui A, Morosawa T, Ishida J, Tanaka M, Endo TA, Mochizuki Y, Toyoda T, Kamiya Y, Shinozaki K, Nambara E, Seki M.

Plant J. 2010 Apr 1;62(1):39-51. doi: 10.1111/j.1365-313X.2010.04135.x. Epub 2010 Jan 20.

PMID:
20088898
[PubMed - indexed for MEDLINE]
16.

Transcriptional regulation of secondary growth in Arabidopsis thaliana.

Oh S, Park S, Han KH.

J Exp Bot. 2003 Dec;54(393):2709-22. Epub 2003 Oct 29.

PMID:
14585825
[PubMed - indexed for MEDLINE]
Free Article
17.

Transcript profiling in Arabidopsis with genome tiling microarrays.

Coman D, Gruissem W, Hennig L.

Methods Mol Biol. 2013;1067:35-49. doi: 10.1007/978-1-62703-607-8_3.

PMID:
23975784
[PubMed - indexed for MEDLINE]
18.

Global expression profiling applied to the analysis of Arabidopsis stamen development.

Alves-Ferreira M, Wellmer F, Banhara A, Kumar V, Riechmann JL, Meyerowitz EM.

Plant Physiol. 2007 Nov;145(3):747-62. Epub 2007 Sep 28.

PMID:
17905860
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants.

Kurihara Y, Kaminuma E, Matsui A, Kawashima M, Tanaka M, Morosawa T, Ishida J, Mochizuki Y, Shinozaki K, Toyoda T, Seki M.

Plant Cell Physiol. 2009 Sep;50(9):1715-20. doi: 10.1093/pcp/pcp109. Epub 2009 Jul 24.

PMID:
19633021
[PubMed - indexed for MEDLINE]
20.

MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.

Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S.

BMC Genomics. 2007 Jul 18;8:242.

PMID:
17640358
[PubMed - indexed for MEDLINE]
Free PMC Article

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