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Results: 1 to 20 of 67

1.

Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers.

Naxerova K, Bult CJ, Peaston A, Fancher K, Knowles BB, Kasif S, Kohane IS.

Genome Biol. 2008;9(7):R108. doi: 10.1186/gb-2008-9-7-r108. Epub 2008 Jul 8.

PMID:
18611264
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Molecular profiling of mouse lung tumors: association with tumor progression, lung development, and human lung adenocarcinomas.

Bonner AE, Lemon WJ, Devereux TR, Lubet RA, You M.

Oncogene. 2004 Feb 5;23(5):1166-76.

PMID:
14647414
[PubMed - indexed for MEDLINE]
3.

Predicting survival within the lung cancer histopathological hierarchy using a multi-scale genomic model of development.

Liu H, Kho AT, Kohane IS, Sun Y.

PLoS Med. 2006 Jul;3(7):e232.

PMID:
16800721
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer.

Kaiser S, Park YK, Franklin JL, Halberg RB, Yu M, Jessen WJ, Freudenberg J, Chen X, Haigis K, Jegga AG, Kong S, Sakthivel B, Xu H, Reichling T, Azhar M, Boivin GP, Roberts RB, Bissahoyo AC, Gonzales F, Bloom GC, Eschrich S, Carter SL, Aronow JE, Kleimeyer J, Kleimeyer M, Ramaswamy V, Settle SH, Boone B, Levy S, Graff JM, Doetschman T, Groden J, Dove WF, Threadgill DW, Yeatman TJ, Coffey RJ Jr, Aronow BJ.

Genome Biol. 2007;8(7):R131.

PMID:
17615082
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Estimating developmental states of tumors and normal tissues using a linear time-ordered model.

Zhang B, Chen B, Wu T, Xuan Z, Zhu X, Chen R.

BMC Bioinformatics. 2011 Feb 11;12:53. doi: 10.1186/1471-2105-12-53.

PMID:
21310084
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The functional cancer map: a systems-level synopsis of genetic deregulation in cancer.

Krupp M, Maass T, Marquardt JU, Staib F, Bauer T, König R, Biesterfeld S, Galle PR, Tresch A, Teufel A.

BMC Med Genomics. 2011 Jun 30;4:53. doi: 10.1186/1755-8794-4-53.

PMID:
21718500
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers.

Kho AT, Zhao Q, Cai Z, Butte AJ, Kim JY, Pomeroy SL, Rowitch DH, Kohane IS.

Genes Dev. 2004 Mar 15;18(6):629-40.

PMID:
15075291
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: gene expression analyses across three different platforms.

Sørlie T, Wang Y, Xiao C, Johnsen H, Naume B, Samaha RR, Børresen-Dale AL.

BMC Genomics. 2006 May 26;7:127.

PMID:
16729877
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Insights into developmental mechanisms and cancers in the mammalian intestine derived from serial analysis of gene expression and study of the hepatoma-derived growth factor (HDGF).

Lepourcelet M, Tou L, Cai L, Sawada J, Lazar AJ, Glickman JN, Williamson JA, Everett AD, Redston M, Fox EA, Nakatani Y, Shivdasani RA.

Development. 2005 Jan;132(2):415-27. Epub 2004 Dec 16.

PMID:
15604097
[PubMed - indexed for MEDLINE]
Free Article
10.

In silico comparison of gene expression levels in ten human tumor types reveals candidate genes associated with carcinogenesis.

Chen S, Zhu B, Yu L.

Cytogenet Genome Res. 2006;112(1-2):53-9.

PMID:
16276090
[PubMed - indexed for MEDLINE]
11.

Predicting the site of origin of tumors by a gene expression signature derived from normal tissues.

Staub E, Buhr HJ, Gröne J.

Oncogene. 2010 Aug 5;29(31):4485-92. doi: 10.1038/onc.2010.196. Epub 2010 May 31.

PMID:
20514016
[PubMed - indexed for MEDLINE]
12.

Integrative transcriptional analysis between human and mouse cancer cells provides a common set of transformation associated genes.

Balestrieri C, Vanoni M, Hautaniemi S, Alberghina L, Chiaradonna F.

Biotechnol Adv. 2012 Jan-Feb;30(1):16-29. doi: 10.1016/j.biotechadv.2011.06.013. Epub 2011 Jun 29.

PMID:
21736933
[PubMed - indexed for MEDLINE]
13.

Analysis of gene expression in prostate cancer epithelial and interstitial stromal cells using laser capture microdissection.

Gregg JL, Brown KE, Mintz EM, Piontkivska H, Fraizer GC.

BMC Cancer. 2010 Apr 28;10:165. doi: 10.1186/1471-2407-10-165.

PMID:
20426842
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Gene expression signatures identify novel regulatory pathways during murine lung development: implications for lung tumorigenesis.

Bonner AE, Lemon WJ, You M.

J Med Genet. 2003 Jun;40(6):408-17.

PMID:
12807961
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Biology of Krüppel-like factor 6 transcriptional regulator in cell life and death.

Andreoli V, Gehrau RC, Bocco JL.

IUBMB Life. 2010 Dec;62(12):896-905. doi: 10.1002/iub.396. Review.

PMID:
21154818
[PubMed - indexed for MEDLINE]
16.

Oncogenic pathway signatures in human cancers as a guide to targeted therapies.

Bild AH, Yao G, Chang JT, Wang Q, Potti A, Chasse D, Joshi MB, Harpole D, Lancaster JM, Berchuck A, Olson JA Jr, Marks JR, Dressman HK, West M, Nevins JR.

Nature. 2006 Jan 19;439(7074):353-7. Epub 2005 Nov 6.

PMID:
16273092
[PubMed - indexed for MEDLINE]
17.

Overlapping gene expression in fetal mouse intestine development and human colorectal cancer.

Hu M, Shivdasani RA.

Cancer Res. 2005 Oct 1;65(19):8715-22.

PMID:
16204040
[PubMed - indexed for MEDLINE]
Free Article
18.

Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours.

Sun R, Fu X, Li Y, Xie Y, Mao Y.

BMC Genomics. 2009 Feb 26;10:93. doi: 10.1186/1471-2164-10-93.

PMID:
19245699
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gene signature-based prediction of tumor response to cyclophosphamide.

Korrat A, Greiner T, Maurer M, Metz T, Fiebig HH.

Cancer Genomics Proteomics. 2007 May-Jun;4(3):187-95. Erratum in: Cancer Genomics Proteomics. 2007 Sep-Oct;4(5):373-5.

PMID:
17878522
[PubMed - indexed for MEDLINE]
Free Article
20.

Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development.

Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR.

BMC Genomics. 2007 Nov 22;8:429.

PMID:
18034876
[PubMed - indexed for MEDLINE]
Free PMC Article

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