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Results: 1 to 20 of 65

1.

Protein structure protection commits gene expression patterns.

Chen J, Liang H, Fernández A.

Genome Biol. 2008;9(7):R107. doi: 10.1186/gb-2008-9-7-r107. Epub 2008 Jul 7.

PMID:
18606003
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Systematic investigation of global coordination among mRNA and protein in cellular society.

Wang H, Wang Q, Pape UJ, Shen B, Huang J, Wu B, Li X.

BMC Genomics. 2010 Jun 9;11:364. doi: 10.1186/1471-2164-11-364.

PMID:
20529381
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Protein under-wrapping causes dosage sensitivity and decreases gene duplicability.

Liang H, Plazonic KR, Chen J, Li WH, Fernández A.

PLoS Genet. 2008 Jan;4(1):e11. doi: 10.1371/journal.pgen.0040011. Epub 2007 Dec 13.

PMID:
18208334
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins.

Jansen R, Gerstein M.

Nucleic Acids Res. 2000 Mar 15;28(6):1481-8.

PMID:
10684945
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle.

Waardenberg AJ, Reverter A, Wells CA, Dalrymple BP.

BMC Syst Biol. 2008 Oct 22;2:88. doi: 10.1186/1752-0509-2-88.

PMID:
18945372
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Post-transcriptional control of gene expression: a genome-wide perspective.

Mata J, Marguerat S, Bähler J.

Trends Biochem Sci. 2005 Sep;30(9):506-14. Review.

PMID:
16054366
[PubMed - indexed for MEDLINE]
7.

Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome.

Lelivelt MJ, Culbertson MR.

Mol Cell Biol. 1999 Oct;19(10):6710-9.

PMID:
10490610
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region.

Kircher M, Bock C, Paulsen M.

BMC Genomics. 2008 Jul 23;9:346. doi: 10.1186/1471-2164-9-346.

PMID:
18651963
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Human capacitance to dosage imbalance: coping with inefficient selection.

Fernández A, Chen J.

Genome Res. 2009 Dec;19(12):2185-92. doi: 10.1101/gr.094441.109. Epub 2009 Oct 9.

PMID:
19819908
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

PMID:
18831774
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Post-transcriptional control of chloroplast gene expression. Accumulation of stable psaC mRNA is due to downstream RNA cleavages in the ndhD gene.

Del Campo EM, Sabater B, Martín M.

J Biol Chem. 2002 Sep 27;277(39):36457-64. Epub 2002 Jul 12.

PMID:
12118005
[PubMed - indexed for MEDLINE]
Free Article
12.

Monitoring of transcriptional regulation in Pichia pastoris under protein production conditions.

Gasser B, Maurer M, Rautio J, Sauer M, Bhattacharyya A, Saloheimo M, Penttilä M, Mattanovich D.

BMC Genomics. 2007 Jun 19;8:179.

PMID:
17578563
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcriptional regulation of post-aggregation genes in Dictyostelium by a feed-forward loop involving GBF and LagC.

Iranfar N, Fuller D, Loomis WF.

Dev Biol. 2006 Feb 15;290(2):460-9. Epub 2006 Jan 4.

PMID:
16386729
[PubMed - indexed for MEDLINE]
Free Article
14.

Expression patterns of protein kinases correlate with gene architecture and evolutionary rates.

Ogurtsov AY, Mariño-Ramírez L, Johnson GR, Landsman D, Shabalina SA, Spiridonov NA.

PLoS One. 2008;3(10):e3599. doi: 10.1371/journal.pone.0003599. Epub 2008 Oct 31.

PMID:
18974838
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Dynamic measure of gene co-regulation.

Farina L, De Santis A, Morelli G, Ruberti I.

IET Syst Biol. 2007 Jan;1(1):10-7.

PMID:
17370425
[PubMed - indexed for MEDLINE]
16.

Integrative analysis using proteome and transcriptome data from yeast to unravel regulatory patterns at post-transcriptional level.

Olivares-Hernández R, Usaite R, Nielsen J.

Biotechnol Bioeng. 2010 Dec 1;107(5):865-75. doi: 10.1002/bit.22868.

PMID:
20635383
[PubMed - indexed for MEDLINE]
17.

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

Wolf MY, Wolf YI, Koonin EV.

Biol Direct. 2008 Oct 7;3:40. doi: 10.1186/1745-6150-3-40.

PMID:
18840284
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling.

Hunt AG, Xu R, Addepalli B, Rao S, Forbes KP, Meeks LR, Xing D, Mo M, Zhao H, Bandyopadhyay A, Dampanaboina L, Marion A, Von Lanken C, Li QQ.

BMC Genomics. 2008 May 14;9:220. doi: 10.1186/1471-2164-9-220.

PMID:
18479511
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Protein wrapping: a molecular marker for association, aggregation and drug design.

Fernández A, Crespo A.

Chem Soc Rev. 2008 Nov;37(11):2373-82. doi: 10.1039/b804150b. Epub 2008 Sep 15. Review.

PMID:
18949110
[PubMed - indexed for MEDLINE]
20.

Global protein expression profiling of budding yeast in response to DNA damage.

Lee MW, Kim BJ, Choi HK, Ryu MJ, Kim SB, Kang KM, Cho EJ, Youn HD, Huh WK, Kim ST.

Yeast. 2007 Mar;24(3):145-54.

PMID:
17351896
[PubMed - indexed for MEDLINE]

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