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Results: 1 to 20 of 119

1.

The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution.

Hernández-Montes G, Díaz-Mejía JJ, Pérez-Rueda E, Segovia L.

Genome Biol. 2008;9(6):R95. doi: 10.1186/gb-2008-9-6-r95. Epub 2008 Jun 9.

PMID:
18541022
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evolutionarily conserved optimization of amino acid biosynthesis.

Perlstein EO, de Bivort BL, Kunes S, Schreiber SL.

J Mol Evol. 2007 Aug;65(2):186-96. Epub 2007 Aug 7.

PMID:
17684697
[PubMed - indexed for MEDLINE]
3.

Influence of metabolic network structure and function on enzyme evolution.

Vitkup D, Kharchenko P, Wagner A.

Genome Biol. 2006;7(5):R39. Epub 2006 May 9.

PMID:
16684370
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Enzyme specialization during the evolution of amino acid biosynthetic pathways.

Parsot C, Saint-Girons I, Cohen GN.

Microbiol Sci. 1987 Sep;4(9):258, 260-2. Review.

PMID:
3153617
[PubMed - indexed for MEDLINE]
5.

Rates of evolution of pyridoxal-5'-phosphate-dependent enzymes.

Salzmann D, Christen P, Mehta PK, Sandmeier E.

Biochem Biophys Res Commun. 2000 Apr 13;270(2):576-80.

PMID:
10753666
[PubMed - indexed for MEDLINE]
6.

Evolution of enzymes in metabolism: a network perspective.

Alves R, Chaleil RA, Sternberg MJ.

J Mol Biol. 2002 Jul 19;320(4):751-70. Erratum in: J Mol Biol 2002 Nov 22;324(2):387.

PMID:
12095253
[PubMed - indexed for MEDLINE]
7.

Multifunctional enzymes and evolution of biosynthetic pathways: retro-evolution by jumps.

Roy S.

Proteins. 1999 Nov 1;37(2):303-9.

PMID:
10584075
[PubMed - indexed for MEDLINE]
8.

The conservation and evolutionary modularity of metabolism.

Peregrín-Alvarez JM, Sanford C, Parkinson J.

Genome Biol. 2009;10(6):R63. doi: 10.1186/gb-2009-10-6-r63. Epub 2009 Jun 12.

PMID:
19523219
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The origin and evolution of modern metabolism.

Caetano-Anollés G, Yafremava LS, Gee H, Caetano-Anollés D, Kim HS, Mittenthal JE.

Int J Biochem Cell Biol. 2009 Feb;41(2):285-97. doi: 10.1016/j.biocel.2008.08.022. Epub 2008 Aug 26. Review.

PMID:
18790074
[PubMed - indexed for MEDLINE]
10.

Pathway length and evolutionary constraint in amino acid biosynthesis.

Rutter MT, Zufall RA.

J Mol Evol. 2004 Feb;58(2):218-24.

PMID:
15042343
[PubMed - indexed for MEDLINE]
11.

Molecular evolution of the lysine biosynthetic pathways.

Velasco AM, Leguina JI, Lazcano A.

J Mol Evol. 2002 Oct;55(4):445-59.

PMID:
12355264
[PubMed - indexed for MEDLINE]
12.

Ordering events of biochemical evolution.

Cunchillos C, Lecointre G.

Biochimie. 2007 May;89(5):555-73. Epub 2007 Jan 4.

PMID:
17408843
[PubMed - indexed for MEDLINE]
13.

Evidence of selection for low cognate amino acid bias in amino acid biosynthetic enzymes.

Alves R, Savageau MA.

Mol Microbiol. 2005 May;56(4):1017-34.

PMID:
15853887
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes.

Fondi M, Brilli M, Fani R.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S12.

PMID:
17430556
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evolution of amino acid metabolism inferred through cladistic analysis.

Cunchillos C, Lecointre G.

J Biol Chem. 2003 Nov 28;278(48):47960-70. Epub 2003 Aug 29.

PMID:
12949083
[PubMed - indexed for MEDLINE]
Free Article
16.

An enzyme-centric approach for modelling non-linear biological complexity.

Yang CR.

BMC Syst Biol. 2008 Aug 1;2:70. doi: 10.1186/1752-0509-2-70.

PMID:
18671883
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Origins and evolution of modern biochemistry: insights from genomes and molecular structure.

Caetano-Anolles G, Sun FJ, Wang M, Yafremava LS, Harish A, Kim HS, Knudsen V, Caetano-Anolles D, Mittenthal JE.

Front Biosci. 2008 May 1;13:5212-40. Review.

PMID:
18508583
[PubMed - indexed for MEDLINE]
18.

Comparative genomics and evolution of eukaryotic phospholipid biosynthesis.

Lykidis A.

Prog Lipid Res. 2007 May-Jul;46(3-4):171-99. Epub 2007 Apr 4. Review.

PMID:
17512056
[PubMed - indexed for MEDLINE]
19.

Modeling the complex dynamics of enzyme-pathway coevolution.

Schütte M, Skupin A, Segrè D, Ebenhöh O.

Chaos. 2010 Dec;20(4):045115. doi: 10.1063/1.3530440.

PMID:
21198127
[PubMed - indexed for MEDLINE]
20.

Analysis of the pathway structure of metabolic networks.

Simpson TW, Follstad BD, Stephanopoulos G.

J Biotechnol. 1999 May 28;71(1-3):207-23.

PMID:
10483107
[PubMed - indexed for MEDLINE]

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