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Results: 1 to 20 of 74

1.

A mouse plasma peptide atlas as a resource for disease proteomics.

Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, Depinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM.

Genome Biol. 2008;9(6):R93. doi: 10.1186/gb-2008-9-6-r93. Epub 2008 Jun 3.

PMID:
18522751
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ.

Genome Biol. 2006;7(4):R35. Epub 2006 Apr 28.

PMID:
16646984
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data.

Mo F, Hong X, Gao F, Du L, Wang J, Omenn GS, Lin B.

BMC Bioinformatics. 2008 Dec 16;9:537. doi: 10.1186/1471-2105-9-537.

PMID:
19087293
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia.

Fröhlich T, Arnold GJ, Fritsch R, Mayr T, Laforsch C.

BMC Genomics. 2009 Apr 21;10:171. doi: 10.1186/1471-2164-10-171.

PMID:
19383153
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Improving peptide identification using an empirical peptide retention time database.

Sun W, Zhang L, Yang R, Shao C, Zhang Z, Gao Y.

Rapid Commun Mass Spectrom. 2009 Jan;23(1):109-18. doi: 10.1002/rcm.3851.

PMID:
19065623
[PubMed - indexed for MEDLINE]
6.

Human Plasma PeptideAtlas.

Deutsch EW, Eng JK, Zhang H, King NL, Nesvizhskii AI, Lin B, Lee H, Yi EC, Ossola R, Aebersold R.

Proteomics. 2005 Aug;5(13):3497-500.

PMID:
16052627
[PubMed - indexed for MEDLINE]
7.

Plasma Proteome Database as a resource for proteomics research.

Muthusamy B, Hanumanthu G, Suresh S, Rekha B, Srinivas D, Karthick L, Vrushabendra BM, Sharma S, Mishra G, Chatterjee P, Mangala KS, Shivashankar HN, Chandrika KN, Deshpande N, Suresh M, Kannabiran N, Niranjan V, Nalli A, Prasad TS, Arun KS, Reddy R, Chandran S, Jadhav T, Julie D, Mahesh M, John SL, Palvankar K, Sudhir D, Bala P, Rashmi NS, Vishnupriya G, Dhar K, Reshma S, Chaerkady R, Gandhi TK, Harsha HC, Mohan SS, Deshpande KS, Sarker M, Pandey A.

Proteomics. 2005 Aug;5(13):3531-6.

PMID:
16041672
[PubMed - indexed for MEDLINE]
8.

High-throughput analysis of rat liver plasma membrane proteome by a nonelectrophoretic in-gel tryptic digestion coupled with mass spectrometry identification.

Cao R, He Q, Zhou J, He Q, Liu Z, Wang X, Chen P, Xie J, Liang S.

J Proteome Res. 2008 Feb;7(2):535-45. doi: 10.1021/pr070411f. Epub 2008 Jan 1.

PMID:
18166008
[PubMed - indexed for MEDLINE]
9.

The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation.

Xia D, Sanderson SJ, Jones AR, Prieto JH, Yates JR, Bromley E, Tomley FM, Lal K, Sinden RE, Brunk BP, Roos DS, Wastling JM.

Genome Biol. 2008;9(7):R116. doi: 10.1186/gb-2008-9-7-r116. Epub 2008 Jul 21.

PMID:
18644147
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.

Omenn GS.

Biochim Biophys Acta. 2014 May;1844(5):866-73. doi: 10.1016/j.bbapap.2013.10.016. Epub 2013 Nov 8.

PMID:
24211518
[PubMed - indexed for MEDLINE]
11.

GAPP: a fully automated software for the confident identification of human peptides from tandem mass spectra.

Shadforth I, Xu W, Crowther D, Bessant C.

J Proteome Res. 2006 Oct;5(10):2849-52.

PMID:
17022656
[PubMed - indexed for MEDLINE]
12.

Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

Anal Chem. 2004 Apr 15;76(8):2355-66.

PMID:
15080748
[PubMed - indexed for MEDLINE]
13.

Elective affinities--bioinformatic analysis of proteomic mass spectrometry data.

Li X, Pizarro A, Grosser T.

Arch Physiol Biochem. 2009 Dec;115(5):311-9. doi: 10.3109/13813450903390039. Review.

PMID:
19911947
[PubMed - indexed for MEDLINE]
14.

Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis.

Sprung RW Jr, Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC.

Mol Cell Proteomics. 2009 Aug;8(8):1988-98. doi: 10.1074/mcp.M800518-MCP200. Epub 2009 May 24.

PMID:
19467989
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Relationship between sample loading amount and peptide identification and its effects on quantitative proteomics.

Liu K, Zhang J, Wang J, Zhao L, Peng X, Jia W, Ying W, Zhu Y, Xie H, He F, Qian X.

Anal Chem. 2009 Feb 15;81(4):1307-14. doi: 10.1021/ac801466k.

PMID:
19146458
[PubMed - indexed for MEDLINE]
16.

[A novel approach for peptide identification by tandem mass spectrometry].

Sheng QH, Tang HX, Xie T, Wang LS, Ding DF.

Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 2003 Aug;35(8):734-40. Chinese.

PMID:
12897969
[PubMed - indexed for MEDLINE]
Free Article
17.

Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry.

Xie H, Onsongo G, Popko J, de Jong EP, Cao J, Carlis JV, Griffin RJ, Rhodus NL, Griffin TJ.

Mol Cell Proteomics. 2008 Mar;7(3):486-98. Epub 2007 Nov 28.

PMID:
18045803
[PubMed - indexed for MEDLINE]
Free Article
18.

Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics.

Shen Y, Zhang R, Moore RJ, Kim J, Metz TO, Hixson KK, Zhao R, Livesay EA, Udseth HR, Smith RD.

Anal Chem. 2005 May 15;77(10):3090-100.

PMID:
15889897
[PubMed - indexed for MEDLINE]
19.

Peptide end sequencing by orthogonal MALDI tandem mass spectrometry.

Nielsen ML, Bennett KL, Larsen B, Moniatte M, Mann M.

J Proteome Res. 2002 Jan-Feb;1(1):63-71.

PMID:
12643528
[PubMed - indexed for MEDLINE]
20.

The effects of shared peptides on protein quantitation in label-free proteomics by LC/MS/MS.

Jin S, Daly DS, Springer DL, Miller JH.

J Proteome Res. 2008 Jan;7(1):164-9. Epub 2007 Nov 15.

PMID:
18001079
[PubMed - indexed for MEDLINE]

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