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Results: 1 to 20 of 141

1.

Correction of technical bias in clinical microarray data improves concordance with known biological information.

Eklund AC, Szallasi Z.

Genome Biol. 2008;9(2):R26. doi: 10.1186/gb-2008-9-2-r26. Epub 2008 Feb 4.

PMID:
18248669
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Multiclass classification of microarray data with repeated measurements: application to cancer.

Yeung KY, Bumgarner RE.

Genome Biol. 2003;4(12):R83. Epub 2003 Nov 24. Erratum in: Genome Biol. 2005;6(13):405-405.4.

PMID:
14659020
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential.

Shi L, Perkins RG, Fang H, Tong W.

Curr Opin Biotechnol. 2008 Feb;19(1):10-8. Epub 2007 Dec 26. Review.

PMID:
18155896
[PubMed - indexed for MEDLINE]
4.

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

BMC Bioinformatics. 2007 Oct 25;8:412.

PMID:
17961233
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Gene set internal coherence in the context of functional profiling.

Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

BMC Genomics. 2009 Apr 27;10:197. doi: 10.1186/1471-2164-10-197.

PMID:
19397819
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Lack of correct data format and comparability limits future integrative microarray research.

Larsson O, Sandberg R.

Nat Biotechnol. 2006 Nov;24(11):1322-3. No abstract available.

PMID:
17093466
[PubMed - indexed for MEDLINE]
7.

Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells.

Maouche S, Poirier O, Godefroy T, Olaso R, Gut I, Collet JP, Montalescot G, Cambien F.

BMC Genomics. 2008 Jun 25;9:302. doi: 10.1186/1471-2164-9-302.

PMID:
18578872
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dye bias correction in dual-labeled cDNA microarray gene expression measurements.

Rosenzweig BA, Pine PS, Domon OE, Morris SM, Chen JJ, Sistare FD.

Environ Health Perspect. 2004 Mar;112(4):480-7.

PMID:
15033598
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Standardizing global gene expression analysis between laboratories and across platforms.

Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H; Members of the Toxicogenomics Research Consortium.

Nat Methods. 2005 May;2(5):351-6. Epub 2005 Apr 21. Erratum in: Nat Methods. 2005 Jun;2(6):477.

PMID:
15846362
[PubMed - indexed for MEDLINE]
10.

Increased measurement accuracy for sequence-verified microarray probes.

Mecham BH, Wetmore DZ, Szallasi Z, Sadovsky Y, Kohane I, Mariani TJ.

Physiol Genomics. 2004 Aug 11;18(3):308-15.

PMID:
15161964
[PubMed - indexed for MEDLINE]
11.

Standards in gene expression microarray experiments.

Salit M.

Methods Enzymol. 2006;411:63-78. Review.

PMID:
16939786
[PubMed - indexed for MEDLINE]
12.

Normalization for triple-target microarray experiments.

Martin-Magniette ML, Aubert J, Bar-Hen A, Elftieh S, Magniette F, Renou JP, Daudin JJ.

BMC Bioinformatics. 2008 Apr 28;9:216. doi: 10.1186/1471-2105-9-216.

PMID:
18442385
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The need for standards, not guidelines, in biological data reporting and sharing.

Burgoon LD.

Nat Biotechnol. 2006 Nov;24(11):1369-73.

PMID:
17093486
[PubMed - indexed for MEDLINE]
14.

Clinically validated benchmarking of normalisation techniques for two-colour oligonucleotide spotted microarray slides.

Listgarten J, Graham K, Damaraju S, Cass C, Mackey J, Zanke B.

Appl Bioinformatics. 2003;2(4):219-28.

PMID:
15130793
[PubMed - indexed for MEDLINE]
15.

An investigation of two multivariate permutation methods for controlling the false discovery proportion.

Korn EL, Li MC, McShane LM, Simon R.

Stat Med. 2007 Oct 30;26(24):4428-40.

PMID:
17357994
[PubMed - indexed for MEDLINE]
16.

Compensating for unknown confounders in microarray data analysis using filtered permutations.

Scheid S, Spang R.

J Comput Biol. 2007 Jun;14(5):669-81.

PMID:
17683267
[PubMed - indexed for MEDLINE]
17.

An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase.

Kohlmann A, Kipps TJ, Rassenti LZ, Downing JR, Shurtleff SA, Mills KI, Gilkes AF, Hofmann WK, Basso G, Dell'orto MC, Foà R, Chiaretti S, De Vos J, Rauhut S, Papenhausen PR, Hernández JM, Lumbreras E, Yeoh AE, Koay ES, Li R, Liu WM, Williams PM, Wieczorek L, Haferlach T.

Br J Haematol. 2008 Sep;142(5):802-7. doi: 10.1111/j.1365-2141.2008.07261.x.

PMID:
18573112
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Microarray analysis of ethanol-induced changes in gene expression.

Kerns RT, Miles MF.

Methods Mol Biol. 2008;447:395-410. doi: 10.1007/978-1-59745-242-7_26. Review.

PMID:
18369932
[PubMed - indexed for MEDLINE]
19.

Quality assessment and data analysis for microRNA expression arrays.

Sarkar D, Parkin R, Wyman S, Bendoraite A, Sather C, Delrow J, Godwin AK, Drescher C, Huber W, Gentleman R, Tewari M.

Nucleic Acids Res. 2009 Feb;37(2):e17. doi: 10.1093/nar/gkn932. Epub 2008 Dec 22.

PMID:
19103660
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Impact of experimental noise and annotation imprecision on data quality in microarray experiments.

Scherer A, Dai M, Meng F.

Methods Mol Biol. 2013;972:155-76. doi: 10.1007/978-1-60327-337-4_10.

PMID:
23385537
[PubMed - indexed for MEDLINE]

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