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Results: 1 to 20 of 218

1.

Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes.

Kikuta H, Fredman D, Rinkwitz S, Lenhard B, Becker TS.

Genome Biol. 2007;8 Suppl 1:S4. Review.

PMID:
18047696
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Large-scale enhancer detection in the zebrafish genome.

Ellingsen S, Laplante MA, König M, Kikuta H, Furmanek T, Hoivik EA, Becker TS.

Development. 2005 Sep;132(17):3799-811. Epub 2005 Jul 27.

PMID:
16049110
[PubMed - indexed for MEDLINE]
Free Article
3.

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.

Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, Thisse C, Thisse B, Foucher I, Adolf B, Geling A, Lenhard B, Becker TS.

Genome Res. 2007 May;17(5):545-55. Epub 2007 Mar 26.

PMID:
17387144
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B.

Genome Res. 2007 Dec;17(12):1898-908. Epub 2007 Nov 7.

PMID:
17989259
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes.

Navratilova P, Fredman D, Hawkins TA, Turner K, Lenhard B, Becker TS.

Dev Biol. 2009 Mar 15;327(2):526-40. doi: 10.1016/j.ydbio.2008.10.044. Epub 2008 Nov 12.

PMID:
19073165
[PubMed - indexed for MEDLINE]
Free Article
6.

The random versus fragile breakage models of chromosome evolution: a matter of resolution.

Becker TS, Lenhard B.

Mol Genet Genomics. 2007 Nov;278(5):487-91. Epub 2007 Sep 13. Review.

PMID:
17851692
[PubMed - indexed for MEDLINE]
7.

Enhancer detection in the zebrafish using pseudotyped murine retroviruses.

Laplante M, Kikuta H, König M, Becker TS.

Methods. 2006 Jul;39(3):189-98.

PMID:
16887366
[PubMed - indexed for MEDLINE]
8.

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout.

Moghadam HK, Ferguson MM, Danzmann RG.

BMC Genomics. 2009 Jun 23;10:278. doi: 10.1186/1471-2164-10-278.

PMID:
19549339
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.

Hufton AL, Mathia S, Braun H, Georgi U, Lehrach H, Vingron M, Poustka AJ, Panopoulou G.

Genome Res. 2009 Nov;19(11):2036-51. doi: 10.1101/gr.093237.109. Epub 2009 Aug 24.

PMID:
19704032
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Zebrafish enhancer detection (ZED) vector: a new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish.

Bessa J, Tena JJ, de la Calle-Mustienes E, Fernández-Miñán A, Naranjo S, Fernández A, Montoliu L, Akalin A, Lenhard B, Casares F, Gómez-Skarmeta JL.

Dev Dyn. 2009 Sep;238(9):2409-17. doi: 10.1002/dvdy.22051.

PMID:
19653328
[PubMed - indexed for MEDLINE]
Free Article
11.

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like.

Nagayoshi S, Hayashi E, Abe G, Osato N, Asakawa K, Urasaki A, Horikawa K, Ikeo K, Takeda H, Kawakami K.

Development. 2008 Jan;135(1):159-69.

PMID:
18065431
[PubMed - indexed for MEDLINE]
Free Article
12.

Cracking the genome's second code: enhancer detection by combined phylogenetic footprinting and transgenic fish and frog embryos.

Allende ML, Manzanares M, Tena JJ, Feijóo CG, Gómez-Skarmeta JL.

Methods. 2006 Jul;39(3):212-9.

PMID:
16806968
[PubMed - indexed for MEDLINE]
13.

Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3.

Goode DK, Snell P, Smith SF, Cooke JE, Elgar G.

Genomics. 2005 Aug;86(2):172-81.

PMID:
15939571
[PubMed - indexed for MEDLINE]
14.

Comparative functional genomics revealed conservation and diversification of three enhancers of the isl1 gene for motor and sensory neuron-specific expression.

Uemura O, Okada Y, Ando H, Guedj M, Higashijima S, Shimazaki T, Chino N, Okano H, Okamoto H.

Dev Biol. 2005 Feb 15;278(2):587-606.

PMID:
15680372
[PubMed - indexed for MEDLINE]
Free Article
15.

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.

Dong X, Navratilova P, Fredman D, Drivenes Ø, Becker TS, Lenhard B.

Nucleic Acids Res. 2010 Mar;38(4):1071-85. doi: 10.1093/nar/gkp1124. Epub 2009 Dec 6.

PMID:
19969543
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes.

Chatterjee S, Bourque G, Lufkin T.

BMC Dev Biol. 2011 Oct 20;11:63. doi: 10.1186/1471-213X-11-63.

PMID:
22011226
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts.

de la Calle-Mustienes E, Feijóo CG, Manzanares M, Tena JJ, Rodríguez-Seguel E, Letizia A, Allende ML, Gómez-Skarmeta JL.

Genome Res. 2005 Aug;15(8):1061-72. Epub 2005 Jul 15.

PMID:
16024824
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A.

BMC Genomics. 2007 Sep 6;8:312.

PMID:
17822543
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparative genomics using fugu: a tool for the identification of conserved vertebrate cis-regulatory elements.

Venkatesh B, Yap WH.

Bioessays. 2005 Jan;27(1):100-7. Review.

PMID:
15612032
[PubMed - indexed for MEDLINE]
20.

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes.

Dong X, Fredman D, Lenhard B.

Genome Biol. 2009;10(8):R86. doi: 10.1186/gb-2009-10-8-r86. Epub 2009 Aug 21.

PMID:
19698106
[PubMed - indexed for MEDLINE]
Free PMC Article

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