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Results: 1 to 20 of 86

1.

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites.

Gnad F, Ren S, Cox J, Olsen JV, Macek B, Oroshi M, Mann M.

Genome Biol. 2007;8(11):R250.

PMID:
18039369
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

NetworKIN: a resource for exploring cellular phosphorylation networks.

Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K, Bork P, Yaffe MB, Pawson T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D695-9. Epub 2007 Nov 2.

PMID:
17981841
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast.

Gnad F, de Godoy LM, Cox J, Neuhauser N, Ren S, Olsen JV, Mann M.

Proteomics. 2009 Oct;9(20):4642-52. doi: 10.1002/pmic.200900144.

PMID:
19795423
[PubMed - indexed for MEDLINE]
4.

PHOSIDA 2011: the posttranslational modification database.

Gnad F, Gunawardena J, Mann M.

Nucleic Acids Res. 2011 Jan;39(Database issue):D253-60. doi: 10.1093/nar/gkq1159. Epub 2010 Nov 16.

PMID:
21081558
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation.

Macek B, Gnad F, Soufi B, Kumar C, Olsen JV, Mijakovic I, Mann M.

Mol Cell Proteomics. 2008 Feb;7(2):299-307. Epub 2007 Oct 15.

PMID:
17938405
[PubMed - indexed for MEDLINE]
Free Article
6.

Comprehensive and reliable phosphorylation site mapping of individual phosphoproteins by combination of multiple stage mass spectrometric analysis with a target-decoy database search.

Han G, Ye M, Jiang X, Chen R, Ren J, Xue Y, Wang F, Song C, Yao X, Zou H.

Anal Chem. 2009 Jul 15;81(14):5794-805. doi: 10.1021/ac900702g.

PMID:
19522514
[PubMed - indexed for MEDLINE]
7.

In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution.

Yachie N, Saito R, Sugahara J, Tomita M, Ishihama Y.

Mol Cell Proteomics. 2009 May;8(5):1061-71. doi: 10.1074/mcp.M800466-MCP200. Epub 2009 Jan 9.

PMID:
19136663
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolution of protein phosphorylation for distinct functional modules in vertebrate genomes.

Wang Z, Ding G, Geistlinger L, Li H, Liu L, Zeng R, Tateno Y, Li Y.

Mol Biol Evol. 2011 Mar;28(3):1131-40. doi: 10.1093/molbev/msq268. Epub 2010 Oct 18.

PMID:
20956806
[PubMed - indexed for MEDLINE]
Free Article
9.

The in vivo phosphorylation sites in multiple isoforms of amphiphysin I from rat brain nerve terminals.

Craft GE, Graham ME, Bache N, Larsen MR, Robinson PJ.

Mol Cell Proteomics. 2008 Jun;7(6):1146-61. doi: 10.1074/mcp.M700351-MCP200. Epub 2008 Mar 14.

PMID:
18344231
[PubMed - indexed for MEDLINE]
Free Article
10.

Weak functional constraints on phosphoproteomes.

Landry CR, Levy ED, Michnick SW.

Trends Genet. 2009 May;25(5):193-7. doi: 10.1016/j.tig.2009.03.003. Epub 2009 Apr 6.

PMID:
19349092
[PubMed - indexed for MEDLINE]
11.

The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update.

Sadowski I, Breitkreutz BJ, Stark C, Su TC, Dahabieh M, Raithatha S, Bernhard W, Oughtred R, Dolinski K, Barreto K, Tyers M.

Database (Oxford). 2013 May 13;2013:bat026. doi: 10.1093/database/bat026. Print 2013.

PMID:
23674503
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information.

Levy ED, Michnick SW, Landry CR.

Philos Trans R Soc Lond B Biol Sci. 2012 Sep 19;367(1602):2594-606. doi: 10.1098/rstb.2012.0078.

PMID:
22889910
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy.

Sui S, Wang J, Yang B, Song L, Zhang J, Chen M, Liu J, Lu Z, Cai Y, Chen S, Bi W, Zhu Y, He F, Qian X.

Proteomics. 2008 May;8(10):2024-34. doi: 10.1002/pmic.200700896.

PMID:
18491316
[PubMed - indexed for MEDLINE]
14.

Identification of complex relationship between protein kinases and substrates during the cell cycle of HeLa cells by phosphoproteomic analysis.

Yang XL, Li QR, Ning ZB, Zhang Y, Zeng R, Wu JR.

Proteomics. 2013 Apr;13(8):1233-46. doi: 10.1002/pmic.201200357. Epub 2013 Mar 20.

PMID:
23322592
[PubMed - indexed for MEDLINE]
15.

CPhos: a program to calculate and visualize evolutionarily conserved functional phosphorylation sites.

Zhao B, Pisitkun T, Hoffert JD, Knepper MA, Saeed F.

Proteomics. 2012 Nov;12(22):3299-303. doi: 10.1002/pmic.201200189. Epub 2012 Oct 29.

PMID:
23001821
[PubMed - indexed for MEDLINE]
16.

LymPHOS: design of a phosphosite database of primary human T cells.

Ovelleiro D, Carrascal M, Casas V, Abian J.

Proteomics. 2009 Jul;9(14):3741-51. doi: 10.1002/pmic.200800701.

PMID:
19639593
[PubMed - indexed for MEDLINE]
17.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

J Proteome Res. 2009 Jun;8(6):3037-43. doi: 10.1021/pr900189c.

PMID:
19354269
[PubMed - indexed for MEDLINE]
18.

PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database.

Yang CY, Chang CH, Yu YL, Lin TC, Lee SA, Yen CC, Yang JM, Lai JM, Hong YR, Tseng TL, Chao KM, Huang CY.

Bioinformatics. 2008 Aug 15;24(16):i14-20. doi: 10.1093/bioinformatics/btn297.

PMID:
18689816
[PubMed - indexed for MEDLINE]
Free Article
19.

Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins.

Zielinska DF, Gnad F, Jedrusik-Bode M, Wiśniewski JR, Mann M.

J Proteome Res. 2009 Aug;8(8):4039-49. doi: 10.1021/pr900384k.

PMID:
19530675
[PubMed - indexed for MEDLINE]
20.

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database.

Jiménez JL, Hegemann B, Hutchins JR, Peters JM, Durbin R.

Genome Biol. 2007;8(5):R90.

PMID:
17521420
[PubMed - indexed for MEDLINE]
Free PMC Article

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