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Results: 1 to 20 of 243

1.

Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions.

van Noort V, Snel B, Huynen MA.

Genome Biol. 2007;8(9):R197.

PMID:
17880677
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Filtering high-throughput protein-protein interaction data using a combination of genomic features.

Patil A, Nakamura H.

BMC Bioinformatics. 2005 Apr 18;6:100.

PMID:
15833142
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

AVID: an integrative framework for discovering functional relationships among proteins.

Jiang T, Keating AE.

BMC Bioinformatics. 2005 Jun 1;6:136.

PMID:
15929793
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-wide prediction of C. elegans genetic interactions.

Zhong W, Sternberg PW.

Science. 2006 Mar 10;311(5766):1481-4.

PMID:
16527984
[PubMed - indexed for MEDLINE]
Free Article
5.

Function prediction and protein networks.

Huynen MA, Snel B, von Mering C, Bork P.

Curr Opin Cell Biol. 2003 Apr;15(2):191-8. Review.

PMID:
12648675
[PubMed - indexed for MEDLINE]
6.

A lock-and-key model for protein-protein interactions.

Morrison JL, Breitling R, Higham DJ, Gilbert DR.

Bioinformatics. 2006 Aug 15;22(16):2012-9. Epub 2006 Jun 20.

PMID:
16787977
[PubMed - indexed for MEDLINE]
Free Article
7.

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.

Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, Han JD, Bertin N, Chung S, Vidal M, Gerstein M.

Genome Res. 2004 Jun;14(6):1107-18.

PMID:
15173116
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae.

Joshi T, Chen Y, Becker JM, Alexandrov N, Xu D.

OMICS. 2004 Winter;8(4):322-33.

PMID:
15703479
[PubMed - indexed for MEDLINE]
9.

A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).

Troyanskaya OG, Dolinski K, Owen AB, Altman RB, Botstein D.

Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8348-53. Epub 2003 Jun 25.

PMID:
12826619
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.

Li D, Li J, Ouyang S, Wang J, Wu S, Wan P, Zhu Y, Xu X, He F.

Proteomics. 2006 Jan;6(2):456-61.

PMID:
16317777
[PubMed - indexed for MEDLINE]
11.

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M.

J Biol. 2006;5(4):11. Epub 2006 Jun 8.

PMID:
16762047
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.

Nabieva E, Jim K, Agarwal A, Chazelle B, Singh M.

Bioinformatics. 2005 Jun;21 Suppl 1:i302-10.

PMID:
15961472
[PubMed - indexed for MEDLINE]
Free Article
13.

PRINCESS, a protein interaction confidence evaluation system with multiple data sources.

Li D, Liu W, Liu Z, Wang J, Liu Q, Zhu Y, He F.

Mol Cell Proteomics. 2008 Jun;7(6):1043-52. doi: 10.1074/mcp.M700287-MCP200. Epub 2008 Jan 29.

PMID:
18230642
[PubMed - indexed for MEDLINE]
Free Article
14.

Discovery of biological networks from diverse functional genomic data.

Myers CL, Robson D, Wible A, Hibbs MA, Chiriac C, Theesfeld CL, Dolinski K, Troyanskaya OG.

Genome Biol. 2005;6(13):R114. Epub 2005 Dec 19.

PMID:
16420673
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae.

Lee I, Li Z, Marcotte EM.

PLoS One. 2007 Oct 3;2(10):e988.

PMID:
17912365
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.

Liu Y, Zhao H.

BMC Bioinformatics. 2004 Oct 25;5:158.

PMID:
15504238
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks.

Hsing M, Byler KG, Cherkasov A.

BMC Syst Biol. 2008 Sep 16;2:80. doi: 10.1186/1752-0509-2-80.

PMID:
18796161
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Probabilistic prediction and ranking of human protein-protein interactions.

Scott MS, Barton GJ.

BMC Bioinformatics. 2007 Jul 5;8:239.

PMID:
17615067
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Increasing confidence of protein interactomes using network topological metrics.

Chen J, Hsu W, Lee ML, Ng SK.

Bioinformatics. 2006 Aug 15;22(16):1998-2004. Epub 2006 Jun 20.

PMID:
16787971
[PubMed - indexed for MEDLINE]
Free Article
20.

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs.

Pitre S, Dehne F, Chan A, Cheetham J, Duong A, Emili A, Gebbia M, Greenblatt J, Jessulat M, Krogan N, Luo X, Golshani A.

BMC Bioinformatics. 2006 Jul 27;7:365.

PMID:
16872538
[PubMed - indexed for MEDLINE]
Free PMC Article

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