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Results: 1 to 20 of 76

1.

Identification of novel stem cell markers using gap analysis of gene expression data.

Krzyzanowski PM, Andrade-Navarro MA.

Genome Biol. 2007;8(9):R193.

PMID:
17875203
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Gene function in early mouse embryonic stem cell differentiation.

Hailesellasse Sene K, Porter CJ, Palidwor G, Perez-Iratxeta C, Muro EM, Campbell PA, Rudnicki MA, Andrade-Navarro MA.

BMC Genomics. 2007 Mar 29;8:85.

PMID:
17394647
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Discovering biological progression underlying microarray samples.

Qiu P, Gentles AJ, Plevritis SK.

PLoS Comput Biol. 2011 Apr;7(4):e1001123. doi: 10.1371/journal.pcbi.1001123. Epub 2011 Apr 14.

PMID:
21533210
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Dissecting early differentially expressed genes in a mixture of differentiating embryonic stem cells.

Hong F, Fang F, He X, Cao X, Chipperfield H, Xie D, Wong WH, Ng HH, Zhong S.

PLoS Comput Biol. 2009 Dec;5(12):e1000607. doi: 10.1371/journal.pcbi.1000607. Epub 2009 Dec 18.

PMID:
20019792
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Computational integration of homolog and pathway gene module expression reveals general stemness signatures.

Koeva M, Forsberg EC, Stuart JM.

PLoS One. 2011 Apr 29;6(4):e18968. doi: 10.1371/journal.pone.0018968.

PMID:
21559491
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Gene discovery analysis from mouse embryonic stem cells based on time course microarray data.

Suh YJ, Cho SA, Shim JH, Yook YJ, Yoo KH, Kim JH, Park EY, Noh JY, Lee SH, Yang MH, Jeong HS, Park JH.

Mol Cells. 2008 Oct 31;26(4):338-43. Epub 2008 Jul 23.

PMID:
18648220
[PubMed - indexed for MEDLINE]
Free Article
7.

Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains.

Sharova LV, Sharov AA, Piao Y, Shaik N, Sullivan T, Stewart CL, Hogan BL, Ko MS.

Dev Biol. 2007 Jul 15;307(2):446-59. Epub 2007 May 10.

PMID:
17560561
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Gene expression profiles during early differentiation of mouse embryonic stem cells.

Mansergh FC, Daly CS, Hurley AL, Wride MA, Hunter SM, Evans MJ.

BMC Dev Biol. 2009 Jan 9;9:5. doi: 10.1186/1471-213X-9-5.

PMID:
19134196
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Semi-supervised Nonnegative Matrix Factorization for gene expression deconvolution: a case study.

Gaujoux R, Seoighe C.

Infect Genet Evol. 2012 Jul;12(5):913-21. doi: 10.1016/j.meegid.2011.08.014. Epub 2011 Sep 10.

PMID:
21930246
[PubMed - indexed for MEDLINE]
10.

Statistical significance analysis of longitudinal gene expression data.

Guo X, Qi H, Verfaillie CM, Pan W.

Bioinformatics. 2003 Sep 1;19(13):1628-35.

PMID:
12967958
[PubMed - indexed for MEDLINE]
Free Article
11.

"NeuroStem Chip": a novel highly specialized tool to study neural differentiation pathways in human stem cells.

Anisimov SV, Christophersen NS, Correia AS, Li JY, Brundin P.

BMC Genomics. 2007 Feb 8;8:46.

PMID:
17288595
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Mouse embryonic stem cell-derived spheres with distinct neurogenic potentials.

Moliner A, Enfors P, Ibáñez CF, Andäng M.

Stem Cells Dev. 2008 Apr;17(2):233-43. doi: 10.1089/scd.2007.0211.

PMID:
18447639
[PubMed - indexed for MEDLINE]
13.

Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.

Maruschke M, Reuter D, Koczan D, Hakenberg OW, Thiesen HJ.

BJU Int. 2011 Jul;108(2 Pt 2):E29-35. doi: 10.1111/j.1464-410X.2010.09794.x. Epub 2011 Mar 16.

PMID:
21435154
[PubMed - indexed for MEDLINE]
14.

Evaluation of methods for oligonucleotide array data via quantitative real-time PCR.

Qin LX, Beyer RP, Hudson FN, Linford NJ, Morris DE, Kerr KF.

BMC Bioinformatics. 2006 Jan 17;7:23.

PMID:
16417622
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An ensemble approach for inferring semi-quantitative regulatory dynamics for the differentiation of mouse embryonic stem cells using prior knowledge.

Lutter D, Bruns P, Theis FJ.

Adv Exp Med Biol. 2012;736:247-60. doi: 10.1007/978-1-4419-7210-1_14.

PMID:
22161333
[PubMed - indexed for MEDLINE]
16.

Feature selection and classification for microarray data analysis: evolutionary methods for identifying predictive genes.

Jirapech-Umpai T, Aitken S.

BMC Bioinformatics. 2005 Jun 15;6:148.

PMID:
15958165
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Handling missing DNA microarray data by kriging estimators.

Pham TD.

Int J Bioinform Res Appl. 2006;2(2):177-92.

PMID:
18048161
[PubMed - indexed for MEDLINE]
18.

Microarray data analysis: from disarray to consolidation and consensus.

Allison DB, Cui X, Page GP, Sabripour M.

Nat Rev Genet. 2006 Jan;7(1):55-65. Review. Erratum in: Nat Rev Genet. 2006 May;7(5):406.

PMID:
16369572
[PubMed - indexed for MEDLINE]
19.

Identification of human embryonic stem cell surface markers by combined membrane-polysome translation state array analysis and immunotranscriptional profiling.

Kolle G, Ho M, Zhou Q, Chy HS, Krishnan K, Cloonan N, Bertoncello I, Laslett AL, Grimmond SM.

Stem Cells. 2009 Oct;27(10):2446-56. doi: 10.1002/stem.182.

PMID:
19650036
[PubMed - indexed for MEDLINE]
Free Article
20.

Transcriptional analysis of early lineage commitment in human embryonic stem cells.

Laslett AL, Grimmond S, Gardiner B, Stamp L, Lin A, Hawes SM, Wormald S, Nikolic-Paterson D, Haylock D, Pera MF.

BMC Dev Biol. 2007 Mar 2;7:12.

PMID:
17335568
[PubMed - indexed for MEDLINE]
Free PMC Article

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