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Results: 1 to 20 of 139

1.

DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data.

Watson M, Dukes J, Abu-Median AB, King DP, Britton P.

Genome Biol. 2007;8(9):R190.

PMID:
17868443
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

WebArray: an online platform for microarray data analysis.

Xia X, McClelland M, Wang Y.

BMC Bioinformatics. 2005 Dec 21;6:306.

PMID:
16371165
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bioinformatics analysis of microarray data.

Zhang Y, Szustakowski J, Schinke M.

Methods Mol Biol. 2009;573:259-84. doi: 10.1007/978-1-60761-247-6_15. Review.

PMID:
19763933
[PubMed - indexed for MEDLINE]
4.

Visualization methods for statistical analysis of microarray clusters.

Hibbs MA, Dirksen NC, Li K, Troyanskaya OG.

BMC Bioinformatics. 2005 May 12;6:115.

PMID:
15890080
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Normal uniform mixture differential gene expression detection for cDNA microarrays.

Dean N, Raftery AE.

BMC Bioinformatics. 2005 Jul 12;6:173.

PMID:
16011807
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

OLIN: optimized normalization, visualization and quality testing of two-channel microarray data.

Futschik ME, Crompton T.

Bioinformatics. 2005 Apr 15;21(8):1724-6. Epub 2004 Dec 7.

PMID:
15585527
[PubMed - indexed for MEDLINE]
Free Article
7.

Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data.

Pan F, Kamath K, Zhang K, Pulapura S, Achar A, Nunez-Iglesias J, Huang Y, Yan X, Han J, Hu H, Xu M, Hu J, Zhou XJ.

Bioinformatics. 2006 Jul 1;22(13):1665-7. Epub 2006 May 3.

PMID:
16672260
[PubMed - indexed for MEDLINE]
Free Article
8.

The effects of normalization on the correlation structure of microarray data.

Qiu X, Brooks AI, Klebanov L, Yakovlev N.

BMC Bioinformatics. 2005 May 16;6:120.

PMID:
15904488
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

RACE: Remote Analysis Computation for gene Expression data.

Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W638-43.

PMID:
15980552
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

BMC Bioinformatics. 2005 Apr 6;6:86.

PMID:
15813968
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

MAGMA: analysis of two-channel microarrays made easy.

Rehrauer H, Zoller S, Schlapbach R.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W86-90. Epub 2007 May 21.

PMID:
17517778
[PubMed - indexed for MEDLINE]
Free PMC Article
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Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
[PubMed - indexed for MEDLINE]
Free Article
15.

Assessing statistical significance in microarray experiments using the distance between microarrays.

Hayden D, Lazar P, Schoenfeld D; Inflammation and the Host Response to Injury Investigators.

PLoS One. 2009 Jun 16;4(6):e5838. doi: 10.1371/journal.pone.0005838.

PMID:
19529777
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

AMDA: an R package for the automated microarray data analysis.

Pelizzola M, Pavelka N, Foti M, Ricciardi-Castagnoli P.

BMC Bioinformatics. 2006 Jul 6;7:335.

PMID:
16824223
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

AnovArray: a set of SAS macros for the analysis of variance of gene expression data.

Hennequet-Antier C, Chiapello H, Piot K, Degrelle S, Hue I, Renard JP, Rodolphe F, Robin S.

BMC Bioinformatics. 2005 Jun 16;6:150.

PMID:
15960854
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

PMID:
15807904
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

NMPP: a user-customized NimbleGen microarray data processing pipeline.

Wang X, He H, Li L, Chen R, Deng XW, Li S.

Bioinformatics. 2006 Dec 1;22(23):2955-7. Epub 2006 Oct 12.

PMID:
17038341
[PubMed - indexed for MEDLINE]
Free Article
20.

A robust two-way semi-linear model for normalization of cDNA microarray data.

Wang D, Huang J, Xie H, Manzella L, Soares MB.

BMC Bioinformatics. 2005 Jan 21;6:14.

PMID:
15663789
[PubMed - indexed for MEDLINE]
Free PMC Article

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