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Results: 1 to 20 of 94

1.

Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation.

He F, Buer J, Zeng AP, Balling R.

Genome Biol. 2007;8(9):R181.

PMID:
17784952
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

PMID:
12399584
[PubMed - indexed for MEDLINE]
Free Article
3.

Quantitative transcription dynamic analysis reveals candidate genes and key regulators for ethanol tolerance in Saccharomyces cerevisiae.

Ma M, Liu LZ.

BMC Microbiol. 2010 Jun 10;10:169. doi: 10.1186/1471-2180-10-169.

PMID:
20537179
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

PMID:
15044243
[PubMed - indexed for MEDLINE]
Free Article
5.

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

PMID:
15113405
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identifying combinatorial regulation of transcription factors and binding motifs.

Kato M, Hata N, Banerjee N, Futcher B, Zhang MQ.

Genome Biol. 2004;5(8):R56. Epub 2004 Jul 28.

PMID:
15287978
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae.

Vu TT, Vohradsky J.

Nucleic Acids Res. 2007;35(1):279-87. Epub 2006 Dec 14.

PMID:
17170011
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p.

Moxley JF, Jewett MC, Antoniewicz MR, Villas-Boas SG, Alper H, Wheeler RT, Tong L, Hinnebusch AG, Ideker T, Nielsen J, Stephanopoulos G.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6477-82. doi: 10.1073/pnas.0811091106. Epub 2009 Apr 3.

PMID:
19346491
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.

Balaji S, Babu MM, Iyer LM, Luscombe NM, Aravind L.

J Mol Biol. 2006 Jun 30;360(1):213-27. Epub 2006 May 3.

PMID:
16762362
[PubMed - indexed for MEDLINE]
10.

Identification of yeast transcriptional regulation networks using multivariate random forests.

Xiao Y, Segal MR.

PLoS Comput Biol. 2009 Jun;5(6):e1000414. doi: 10.1371/journal.pcbi.1000414. Epub 2009 Jun 19.

PMID:
19543377
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Integrating genomic data to predict transcription factor binding.

Holloway DT, Kon M, DeLisi C.

Genome Inform. 2005;16(1):83-94.

PMID:
16362910
[PubMed - indexed for MEDLINE]
12.

Identifying cooperativity among transcription factors controlling the cell cycle in yeast.

Banerjee N, Zhang MQ.

Nucleic Acids Res. 2003 Dec 1;31(23):7024-31.

PMID:
14627835
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcriptional responses to fatty acid are coordinated by combinatorial control.

Smith JJ, Ramsey SA, Marelli M, Marzolf B, Hwang D, Saleem RA, Rachubinski RA, Aitchison JD.

Mol Syst Biol. 2007;3:115. Epub 2007 Jun 5.

PMID:
17551510
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Association of RAP1 binding sites with stringent control of ribosomal protein gene transcription in Saccharomyces cerevisiae.

Moehle CM, Hinnebusch AG.

Mol Cell Biol. 1991 May;11(5):2723-35.

PMID:
2017175
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Dynamic and complex transcription factor binding during an inducible response in yeast.

Ni L, Bruce C, Hart C, Leigh-Bell J, Gelperin D, Umansky L, Gerstein MB, Snyder M.

Genes Dev. 2009 Jun 1;23(11):1351-63. doi: 10.1101/gad.1781909.

PMID:
19487574
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Regulatory element detection using correlation with expression.

Bussemaker HJ, Li H, Siggia ED.

Nat Genet. 2001 Feb;27(2):167-71.

PMID:
11175784
[PubMed - indexed for MEDLINE]
17.

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID:
15748298
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R.

BMC Bioinformatics. 2010 Jun 29;11:355. doi: 10.1186/1471-2105-11-355.

PMID:
20587029
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

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