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Results: 1 to 20 of 116

1.

Functional constraint and small insertions and deletions in the ENCODE regions of the human genome.

Clark TG, Andrew T, Cooper GM, Margulies EH, Mullikin JC, Balding DJ.

Genome Biol. 2007;8(9):R180.

PMID:
17784950
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

An initial map of insertion and deletion (INDEL) variation in the human genome.

Mills RE, Luttig CT, Larkins CE, Beauchamp A, Tsui C, Pittard WS, Devine SE.

Genome Res. 2006 Sep;16(9):1182-90. Epub 2006 Aug 10.

PMID:
16902084
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.

Volfovsky N, Oleksyk TK, Cruz KC, Truelove AL, Stephens RM, Smith MW.

BMC Genomics. 2009 Jan 26;10:51. doi: 10.1186/1471-2164-10-51.

PMID:
19171065
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Small insertions are more deleterious than small deletions in human genomes.

Huang S, Li J, Xu A, Huang G, You L.

Hum Mutat. 2013 Dec;34(12):1642-9. doi: 10.1002/humu.22435. Epub 2013 Sep 18.

PMID:
24000181
[PubMed - indexed for MEDLINE]
5.

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.

Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J; 1000 Genomes Project Consortium, MacArthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G.

Genome Res. 2013 May;23(5):749-61. doi: 10.1101/gr.148718.112. Epub 2013 Mar 11.

PMID:
23478400
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Small insertions and deletions (INDELs) in human genomes.

Mullaney JM, Mills RE, Pittard WS, Devine SE.

Hum Mol Genet. 2010 Oct 15;19(R2):R131-6. doi: 10.1093/hmg/ddq400. Epub 2010 Sep 21. Review.

PMID:
20858594
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.

Wetterbom A, Sevov M, Cavelier L, Bergström TF.

J Mol Evol. 2006 Nov;63(5):682-90. Epub 2006 Oct 29.

PMID:
17075697
[PubMed - indexed for MEDLINE]
8.

The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates.

Brandström M, Ellegren H.

Genetics. 2007 Jul;176(3):1691-701. Epub 2007 May 16.

PMID:
17507681
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Exploring the selective constraint on the sizes of insertions and deletions in 5' untranslated regions in mammals.

Chen CH, Liao BY, Chen FC.

BMC Evol Biol. 2011 Jul 5;11:192. doi: 10.1186/1471-2148-11-192.

PMID:
21726469
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Sequence context affects the rate of short insertions and deletions in flies and primates.

Tanay A, Siggia ED.

Genome Biol. 2008;9(2):R37. doi: 10.1186/gb-2008-9-2-r37. Epub 2008 Feb 21.

PMID:
18291026
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Tracing the most parsimonious indel history.

Snir S, Pachter L.

J Comput Biol. 2011 Aug;18(8):967-86. doi: 10.1089/cmb.2010.0325. Epub 2011 Jul 5.

PMID:
21728862
[PubMed - indexed for MEDLINE]
12.

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.

Mu XJ, Lu ZJ, Kong Y, Lam HY, Gerstein MB.

Nucleic Acids Res. 2011 Sep 1;39(16):7058-76. doi: 10.1093/nar/gkr342. Epub 2011 May 19.

PMID:
21596777
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Novel polymorphisms in UTR and coding region of inducible heat shock protein 70.1 gene in tropically adapted Indian zebu cattle (Bos indicus) and riverine buffalo (Bubalus bubalis).

Sodhi M, Mukesh M, Kishore A, Mishra BP, Kataria RS, Joshi BK.

Gene. 2013 Sep 25;527(2):606-15. doi: 10.1016/j.gene.2013.05.078. Epub 2013 Jun 19.

PMID:
23792016
[PubMed - indexed for MEDLINE]
14.

Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication.

Guo B, Zou M, Wagner A.

Mol Biol Evol. 2012 Oct;29(10):3005-22. Epub 2012 Apr 4.

PMID:
22490820
[PubMed - indexed for MEDLINE]
Free Article
15.

Human-specific insertions and deletions inferred from mammalian genome sequences.

Chen FC, Chen CJ, Li WH, Chuang TJ.

Genome Res. 2007 Jan;17(1):16-22. Epub 2006 Nov 9.

PMID:
17095709
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes.

Taylor MS, Ponting CP, Copley RR.

Genome Res. 2004 Apr;14(4):555-66.

PMID:
15059996
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.

Lunter G.

Bioinformatics. 2007 Jul 1;23(13):i289-96.

PMID:
17646308
[PubMed - indexed for MEDLINE]
Free Article
18.

Patterns and relative rates of nucleotide and insertion/deletion evolution at six chloroplast intergenic regions in new world species of the Lecythidaceae.

Hamilton MB, Braverman JM, Soria-Hernanz DF.

Mol Biol Evol. 2003 Oct;20(10):1710-21. Epub 2003 Jun 27.

PMID:
12832633
[PubMed - indexed for MEDLINE]
Free Article
19.

Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria.

Chen JQ, Wu Y, Yang H, Bergelson J, Kreitman M, Tian D.

Mol Biol Evol. 2009 Jul;26(7):1523-31. doi: 10.1093/molbev/msp063. Epub 2009 Mar 27.

PMID:
19329651
[PubMed - indexed for MEDLINE]
Free Article
20.

Distribution and intensity of constraint in mammalian genomic sequence.

Cooper GM, Stone EA, Asimenos G; NISC Comparative Sequencing Program, Green ED, Batzoglou S, Sidow A.

Genome Res. 2005 Jul;15(7):901-13. Epub 2005 Jun 17.

PMID:
15965027
[PubMed - indexed for MEDLINE]
Free PMC Article

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