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Results: 1 to 20 of 82

1.

PyCogent: a toolkit for making sense from sequence.

Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA.

Genome Biol. 2007;8(8):R171.

PMID:
17708774
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis.

Rampp M, Soddemann T, Lederer H.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W15-9.

PMID:
16844980
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

BiDiBlast: comparative genomics pipeline for the PC.

de Almeida JM.

Genomics Proteomics Bioinformatics. 2010 Jun;8(2):135-8. doi: 10.1016/S1672-0229(10)60015-0.

PMID:
20691399
[PubMed - indexed for MEDLINE]
Free Article
4.

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

PMID:
15655071
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Easyfig: a genome comparison visualizer.

Sullivan MJ, Petty NK, Beatson SA.

Bioinformatics. 2011 Apr 1;27(7):1009-10. doi: 10.1093/bioinformatics/btr039. Epub 2011 Jan 28.

PMID:
21278367
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

CoGenT++: an extensive and extensible data environment for computational genomics.

Goldovsky L, Janssen P, Ahrén D, Audit B, Cases I, Darzentas N, Enright AJ, López-Bigas N, Peregrin-Alvarez JM, Smith M, Tsoka S, Kunin V, Ouzounis CA.

Bioinformatics. 2005 Oct 1;21(19):3806-10.

PMID:
16216832
[PubMed - indexed for MEDLINE]
Free Article
7.

PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.

He J, Dai X, Zhao X.

BMC Bioinformatics. 2007 Feb 9;8:53.

PMID:
17291345
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Mocapy++--a toolkit for inference and learning in dynamic Bayesian networks.

Paluszewski M, Hamelryck T.

BMC Bioinformatics. 2010 Mar 12;11:126. doi: 10.1186/1471-2105-11-126.

PMID:
20226024
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genoviz Software Development Kit: Java tool kit for building genomics visualization applications.

Helt GA, Nicol JW, Erwin E, Blossom E, Blanchard SG Jr, Chervitz SA, Harmon C, Loraine AE.

BMC Bioinformatics. 2009 Aug 25;10:266. doi: 10.1186/1471-2105-10-266.

PMID:
19706180
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Pegasys: software for executing and integrating analyses of biological sequences.

Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.

BMC Bioinformatics. 2004 Apr 19;5:40.

PMID:
15096276
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Unipro UGENE: a unified bioinformatics toolkit.

Okonechnikov K, Golosova O, Fursov M; UGENE team.

Bioinformatics. 2012 Apr 15;28(8):1166-7. doi: 10.1093/bioinformatics/bts091. Epub 2012 Feb 24.

PMID:
22368248
[PubMed - indexed for MEDLINE]
Free Article
12.

Next generation tools for genomic data generation, distribution, and visualization.

Nix DA, Di Sera TL, Dalley BK, Milash BA, Cundick RM, Quinn KS, Courdy SJ.

BMC Bioinformatics. 2010 Sep 9;11:455. doi: 10.1186/1471-2105-11-455.

PMID:
20828407
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.

Schmidt HA, Strimmer K, Vingron M, von Haeseler A.

Bioinformatics. 2002 Mar;18(3):502-4.

PMID:
11934758
[PubMed - indexed for MEDLINE]
Free Article
14.

GenomeDiagram: a python package for the visualization of large-scale genomic data.

Pritchard L, White JA, Birch PR, Toth IK.

Bioinformatics. 2006 Mar 1;22(5):616-7. Epub 2005 Dec 23.

PMID:
16377612
[PubMed - indexed for MEDLINE]
Free Article
15.

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.

Nicol JW, Helt GA, Blanchard SG Jr, Raja A, Loraine AE.

Bioinformatics. 2009 Oct 15;25(20):2730-1. doi: 10.1093/bioinformatics/btp472. Epub 2009 Aug 4.

PMID:
19654113
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Bioclipse: an open source workbench for chemo- and bioinformatics.

Spjuth O, Helmus T, Willighagen EL, Kuhn S, Eklund M, Wagener J, Murray-Rust P, Steinbeck C, Wikberg JE.

BMC Bioinformatics. 2007 Feb 22;8:59.

PMID:
17316423
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses.

Barker MS, Dlugosch KM, Reddy AC, Amyotte SN, Rieseberg LH.

Bioinformatics. 2009 Feb 15;25(4):535-6. doi: 10.1093/bioinformatics/btp011. Epub 2009 Jan 6.

PMID:
19129211
[PubMed - indexed for MEDLINE]
Free Article
18.

Chimera: construction of chimeric sequences for phylogenetic analysis.

Leunissen JA.

Bioinformatics. 2003 Jan 22;19(2):303-4.

PMID:
12538261
[PubMed - indexed for MEDLINE]
Free Article
19.

Computational method for temporal pattern discovery in biomedical genomic databases.

Rafiq MI, O'Connor MJ, Das AK.

Proc IEEE Comput Syst Bioinform Conf. 2005:362-5.

PMID:
16447993
[PubMed - indexed for MEDLINE]
20.

An XML message broker framework for exchange and integration of microarray data.

Tjandra D, Wong S, Shen W, Pulliam B, Yu E, Esserman L.

Bioinformatics. 2003 Sep 22;19(14):1844-5.

PMID:
14512357
[PubMed - indexed for MEDLINE]
Free Article

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