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Results: 1 to 20 of 79

1.

Accuracy and quality of massively parallel DNA pyrosequencing.

Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM.

Genome Biol. 2007;8(7):R143.

PMID:
17659080
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes.

Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM.

PLoS One. 2009 Jul 27;4(7):e6372. doi: 10.1371/journal.pone.0006372. Erratum in: PLoS One. 2009;4(12). doi: 10.1371/annotation/50c43133-0df5-4b8b-8975-8cc37d4f2f26.

PMID:
19633714
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.

Kunin V, Engelbrektson A, Ochman H, Hugenholtz P.

Environ Microbiol. 2010 Jan;12(1):118-23. doi: 10.1111/j.1462-2920.2009.02051.x. Epub 2009 Aug 27.

PMID:
19725865
[PubMed - indexed for MEDLINE]
4.

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.

Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora MJ, Chistoserdov A, Orsi W, Edgcomb VP.

BMC Biol. 2009 Nov 3;7:72. doi: 10.1186/1741-7007-7-72.

PMID:
19886985
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing.

Gilles A, Meglécz E, Pech N, Ferreira S, Malausa T, Martin JF.

BMC Genomics. 2011 May 19;12:245. doi: 10.1186/1471-2164-12-245.

PMID:
21592414
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.

Vega-Arreguín JC, Ibarra-Laclette E, Jiménez-Moraila B, Martínez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A.

BMC Genomics. 2009 Jul 6;10:299. doi: 10.1186/1471-2164-10-299.

PMID:
19580677
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition.

Kysela DT, Palacios C, Sogin ML.

Environ Microbiol. 2005 Mar;7(3):356-64.

PMID:
15683396
[PubMed - indexed for MEDLINE]
8.

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.

Behnke A, Engel M, Christen R, Nebel M, Klein RR, Stoeck T.

Environ Microbiol. 2011 Feb;13(2):340-9. doi: 10.1111/j.1462-2920.2010.02332.x. Epub 2010 Sep 8.

PMID:
21281421
[PubMed - indexed for MEDLINE]
9.

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.

Binladen J, Gilbert MT, Bollback JP, Panitz F, Bendixen C, Nielsen R, Willerslev E.

PLoS One. 2007 Feb 14;2(2):e197.

PMID:
17299583
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Microdroplet-based PCR enrichment for large-scale targeted sequencing.

Tewhey R, Warner JB, Nakano M, Libby B, Medkova M, David PH, Kotsopoulos SK, Samuels ML, Hutchison JB, Larson JW, Topol EJ, Weiner MP, Harismendy O, Olson J, Link DR, Frazer KA.

Nat Biotechnol. 2009 Nov;27(11):1025-31. doi: 10.1038/nbt.1583. Epub 2009 Nov 1. Erratum in: Nat Biotechnol. 2010 Feb;28(2):178.

PMID:
19881494
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing.

Armougom F, Bittar F, Stremler N, Rolain JM, Robert C, Dubus JC, Sarles J, Raoult D, La Scola B.

Eur J Clin Microbiol Infect Dis. 2009 Sep;28(9):1151-4. doi: 10.1007/s10096-009-0749-x. Epub 2009 May 16.

PMID:
19449045
[PubMed - indexed for MEDLINE]
12.

Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli.

Martínez-Murcia AJ, Antón AI, Rodríguez-Valera F.

Int J Syst Bacteriol. 1999 Apr;49 Pt 2:601-10.

PMID:
10319482
[PubMed - indexed for MEDLINE]
Free Article
13.

Use of the 16S--23S ribosomal genes spacer region in studies of prokaryotic diversity.

García-Martínez J, Acinas SG, Antón AI, Rodríguez-Valera F.

J Microbiol Methods. 1999 May;36(1-2):55-64.

PMID:
10353800
[PubMed - indexed for MEDLINE]
14.

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae.

Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Pires JC.

Am J Bot. 2012 Feb;99(2):330-48. doi: 10.3732/ajb.1100491. Epub 2012 Jan 30.

PMID:
22291168
[PubMed - indexed for MEDLINE]
Free Article
15.

Concurrent genotyping of Helicobacter pylori virulence genes and human cytokine SNP sites using whole genome amplified DNA derived from minute amounts of gastric biopsy specimen DNA.

Ryberg A, Borch K, Sun YQ, Monstein HJ.

BMC Microbiol. 2008 Oct 8;8:175. doi: 10.1186/1471-2180-8-175.

PMID:
18842150
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling.

Palmieri N, Schlötterer C.

PLoS One. 2009 Jul 28;4(7):e6323. doi: 10.1371/journal.pone.0006323.

PMID:
19636379
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates.

Thornhill DJ, Lajeunesse TC, Santos SR.

Mol Ecol. 2007 Dec;16(24):5326-40. Epub 2007 Nov 11.

PMID:
17995924
[PubMed - indexed for MEDLINE]
18.

JAGUC--a software package for environmental diversity analyses.

Nebel ME, Wild S, Holzhauser M, Hüttenberger L, Reitzig R, Sperber M, Stoeck T.

J Bioinform Comput Biol. 2011 Dec;9(6):749-73.

PMID:
22084012
[PubMed - indexed for MEDLINE]
19.

6-10× pyrosequencing is a practical approach for whole prokaryote genome studies.

Li J, Jiang J, Leung FC.

Gene. 2012 Feb 15;494(1):57-64. doi: 10.1016/j.gene.2011.11.051. Epub 2011 Dec 13.

PMID:
22192914
[PubMed - indexed for MEDLINE]
20.

The complete genome of an individual by massively parallel DNA sequencing.

Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

Nature. 2008 Apr 17;452(7189):872-6. doi: 10.1038/nature06884.

PMID:
18421352
[PubMed - indexed for MEDLINE]

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