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Results: 1 to 20 of 77

1.

A rational route to probing membrane proteins.

Keating AE.

Genome Biol. 2007;8(5):214. Review.

PMID:
17540048
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Binding sites in membrane proteins--diversity, druggability and prospects.

Adams R, Worth CL, Guenther S, Dunkel M, Lehmann R, Preissner R.

Eur J Cell Biol. 2012 Apr;91(4):326-39. doi: 10.1016/j.ejcb.2011.06.003. Epub 2011 Aug 27. Review.

PMID:
21872966
[PubMed - indexed for MEDLINE]
3.

Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.

Natt NK, Kaur H, Raghava GP.

Proteins. 2004 Jul 1;56(1):11-8.

PMID:
15162482
[PubMed - indexed for MEDLINE]
4.

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Krogh A, Larsson B, von Heijne G, Sonnhammer EL.

J Mol Biol. 2001 Jan 19;305(3):567-80.

PMID:
11152613
[PubMed - indexed for MEDLINE]
5.

Computational design of peptide ligands.

Vanhee P, van der Sloot AM, Verschueren E, Serrano L, Rousseau F, Schymkowitz J.

Trends Biotechnol. 2011 May;29(5):231-9. doi: 10.1016/j.tibtech.2011.01.004. Epub 2011 Feb 12. Review.

PMID:
21316780
[PubMed - indexed for MEDLINE]
6.

Computational design of membrane proteins.

Senes A.

Curr Opin Struct Biol. 2011 Aug;21(4):460-6. doi: 10.1016/j.sbi.2011.06.004. Epub 2011 Jul 15. Review.

PMID:
21763125
[PubMed - indexed for MEDLINE]
7.

A linguistic model for the rational design of antimicrobial peptides.

Loose C, Jensen K, Rigoutsos I, Stephanopoulos G.

Nature. 2006 Oct 19;443(7113):867-9.

PMID:
17051220
[PubMed - indexed for MEDLINE]
8.

Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions.

Lehnert U, Xia Y, Royce TE, Goh CS, Liu Y, Senes A, Yu H, Zhang ZL, Engelman DM, Gerstein M.

Q Rev Biophys. 2004 May;37(2):121-46. Review.

PMID:
15999419
[PubMed - indexed for MEDLINE]
9.

Peptide probes for protein transmembrane domains.

Slivka PF, Wong J, Caputo GA, Yin H.

ACS Chem Biol. 2008 Jul 18;3(7):402-11. doi: 10.1021/cb800049w. Review.

PMID:
18533658
[PubMed - indexed for MEDLINE]
10.

[Structural genomics and proteomics in JBIRC, AIST].

Kyogoku Y.

Tanpakushitsu Kakusan Koso. 2002 Jun;47(8 Suppl):977-81. Japanese. No abstract available.

PMID:
12099050
[PubMed - indexed for MEDLINE]
11.

Bioinformatic approaches for the structure and function of membrane proteins.

Nam HJ, Jeon J, Kim S.

BMB Rep. 2009 Nov 30;42(11):697-704. Review.

PMID:
19944009
[PubMed - indexed for MEDLINE]
Free Article
12.

Peptidic modulators of protein-protein interactions: progress and challenges in computational design.

Rubinstein M, Niv MY.

Biopolymers. 2009 Jul;91(7):505-13. doi: 10.1002/bip.21164. Review.

PMID:
19226619
[PubMed - indexed for MEDLINE]
13.

PRALINETM: a strategy for improved multiple alignment of transmembrane proteins.

Pirovano W, Feenstra KA, Heringa J.

Bioinformatics. 2008 Feb 15;24(4):492-7. doi: 10.1093/bioinformatics/btm636. Epub 2008 Jan 2.

PMID:
18174178
[PubMed - indexed for MEDLINE]
Free Article
14.

Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.

Sadka T, Linial M.

Bioinformatics. 2005 Jun;21 Suppl 1:i378-86.

PMID:
15961481
[PubMed - indexed for MEDLINE]
Free Article
15.

Analysis of structured and intrinsically disordered regions of transmembrane proteins.

Xue B, Li L, Meroueh SO, Uversky VN, Dunker AK.

Mol Biosyst. 2009 Dec;5(12):1688-1702. doi: 10.1039/B905913J.

PMID:
19585006
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Computational differentiation of N-terminal signal peptides and transmembrane helices.

Yuan Z, Davis MJ, Zhang F, Teasdale RD.

Biochem Biophys Res Commun. 2003 Dec 26;312(4):1278-83.

PMID:
14652012
[PubMed - indexed for MEDLINE]
17.

Identifying the hub proteins from complicated membrane protein network systems.

Shen YZ, Ding YS, Gu Q, Chou KC.

Med Chem. 2010 May;6(3):165-73.

PMID:
20507268
[PubMed - indexed for MEDLINE]
18.

Online tools for predicting integral membrane proteins.

Bigelow H, Rost B.

Methods Mol Biol. 2009;528:3-23. doi: 10.1007/978-1-60327-310-7_1.

PMID:
19153681
[PubMed - indexed for MEDLINE]
19.

Predicting the transmembrane secondary structure of ligand-gated ion channels.

Bertaccini E, Trudell JR.

Protein Eng. 2002 Jun;15(6):443-54.

PMID:
12082162
[PubMed - indexed for MEDLINE]
Free Article
20.

Spontaneous integration of transmembrane peptides into a bacterial magnetic particle membrane and its application to display of useful proteins.

Tanaka T, Takeda H, Kokuryu Y, Matsunaga T.

Anal Chem. 2004 Jul 1;76(13):3764-9.

PMID:
15228352
[PubMed - indexed for MEDLINE]

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