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Results: 1 to 20 of 99

1.

Unequal evolutionary conservation of human protein interactions in interologous networks.

Brown KR, Jurisica I.

Genome Biol. 2007;8(5):R95.

PMID:
17535438
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Prediction of evolutionarily conserved interologs in Mus musculus.

Yellaboina S, Dudekula DB, Ko MSh.

BMC Genomics. 2008 Oct 8;9:465. doi: 10.1186/1471-2164-9-465.

PMID:
18842131
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Stable evolutionary signal in a yeast protein interaction network.

Wuchty S, Barabási AL, Ferdig MT.

BMC Evol Biol. 2006 Jan 30;6:8.

PMID:
16441898
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Protein-protein interactions more conserved within species than across species.

Mika S, Rost B.

PLoS Comput Biol. 2006 Jul 21;2(7):e79. Epub 2006 May 18.

PMID:
16854211
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction.

Ananthasubramanian S, Metri R, Khetan A, Gupta A, Handen A, Chandra N, Ganapathiraju M.

Microb Inform Exp. 2012 Mar 21;2:4. doi: 10.1186/2042-5783-2-4.

PMID:
22587966
[PubMed]
Free PMC Article
6.

Identifying conserved protein complexes between species by constructing interolog networks.

Nguyen PV, Srihari S, Leong HW.

BMC Bioinformatics. 2013;14 Suppl 16:S8. doi: 10.1186/1471-2105-14-S16-S8. Epub 2013 Oct 22.

PMID:
24564762
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Evolution of protein-protein interaction network.

Makino T, Gojobori T.

Genome Dyn. 2007;3:13-29. doi: 10.1159/000107601. Review.

PMID:
18753782
[PubMed - indexed for MEDLINE]
8.
9.

Network evolution: rewiring and signatures of conservation in signaling.

Sun MG, Sikora M, Costanzo M, Boone C, Kim PM.

PLoS Comput Biol. 2012;8(3):e1002411. doi: 10.1371/journal.pcbi.1002411. Epub 2012 Mar 15.

PMID:
22438796
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evolutionary conservation in multiple faces of protein interaction.

Choi YS, Yang JS, Choi Y, Ryu SH, Kim S.

Proteins. 2009 Oct;77(1):14-25. doi: 10.1002/prot.22410.

PMID:
19350617
[PubMed - indexed for MEDLINE]
11.

Biological interaction networks are conserved at the module level.

Zinman GE, Zhong S, Bar-Joseph Z.

BMC Syst Biol. 2011 Aug 23;5:134. doi: 10.1186/1752-0509-5-134.

PMID:
21861884
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The role of structural disorder in the rewiring of protein interactions through evolution.

Mosca R, Pache RA, Aloy P.

Mol Cell Proteomics. 2012 Jul;11(7):M111.014969. doi: 10.1074/mcp.M111.014969. Epub 2012 Mar 2.

PMID:
22389433
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Conservation and topology of protein interaction networks under duplication-divergence evolution.

Evlampiev K, Isambert H.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9863-8. doi: 10.1073/pnas.0804119105. Epub 2008 Jul 16.

PMID:
18632555
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Modeling protein network evolution under genome duplication and domain shuffling.

Evlampiev K, Isambert H.

BMC Syst Biol. 2007 Nov 13;1:49.

PMID:
17999763
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evolutionary conservation of motif constituents in the yeast protein interaction network.

Wuchty S, Oltvai ZN, Barabási AL.

Nat Genet. 2003 Oct;35(2):176-9. Epub 2003 Sep 14.

PMID:
12973352
[PubMed - indexed for MEDLINE]
16.

An integrative in silico approach for discovering candidates for drug-targetable protein-protein interactions in interactome data.

Sugaya N, Ikeda K, Tashiro T, Takeda S, Otomo J, Ishida Y, Shiratori A, Toyoda A, Noguchi H, Takeda T, Kuhara S, Sakaki Y, Iwayanagi T.

BMC Pharmacol. 2007 Aug 20;7:10.

PMID:
17705877
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.

Durek P, Walther D.

BMC Syst Biol. 2008 Nov 25;2:100. doi: 10.1186/1752-0509-2-100.

PMID:
19032748
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.

Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, Han JD, Bertin N, Chung S, Vidal M, Gerstein M.

Genome Res. 2004 Jun;14(6):1107-18.

PMID:
15173116
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Identification of conserved protein complexes based on a model of protein network evolution.

Hirsh E, Sharan R.

Bioinformatics. 2007 Jan 15;23(2):e170-6.

PMID:
17237088
[PubMed - indexed for MEDLINE]
Free Article
20.

Understanding protein evolutionary rate by integrating gene co-expression with protein interactions.

Pang K, Cheng C, Xuan Z, Sheng H, Ma X.

BMC Syst Biol. 2010 Dec 30;4:179. doi: 10.1186/1752-0509-4-179.

PMID:
21190591
[PubMed - indexed for MEDLINE]
Free PMC Article

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