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Results: 1 to 20 of 131

1.

Modular organization in the reductive evolution of protein-protein interaction networks.

Tamames J, Moya A, Valencia A.

Genome Biol. 2007;8(5):R94.

PMID:
17532860
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313. doi: 10.1186/1471-2164-9-313.

PMID:
18590549
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola.

Viñuelas J, Calevro F, Remond D, Bernillon J, Rahbé Y, Febvay G, Fayard JM, Charles H.

BMC Genomics. 2007 Jun 4;8:143.

PMID:
17547756
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.

Del Mondo G, Eveillard D, Rusu I.

Bioinformatics. 2009 Apr 1;25(7):926-32. doi: 10.1093/bioinformatics/btp083. Epub 2009 Feb 17.

PMID:
19223451
[PubMed - indexed for MEDLINE]
Free Article
5.

Impacts of protein-protein interaction domains on organism and network complexity.

Xia K, Fu Z, Hou L, Han JD.

Genome Res. 2008 Sep;18(9):1500-8. doi: 10.1101/gr.068130.107. Epub 2008 Aug 7.

PMID:
18687879
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evolution of metabolic network organization.

Mazurie A, Bonchev D, Schwikowski B, Buck GA.

BMC Syst Biol. 2010 May 11;4:59. doi: 10.1186/1752-0509-4-59.

PMID:
20459825
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.

Bordner AJ, Gorin AA.

BMC Bioinformatics. 2008 May 12;9:234. doi: 10.1186/1471-2105-9-234.

PMID:
18474114
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A unified representation of multiprotein complex data for modeling interaction networks.

Ding C, He X, Meraz RF, Holbrook SR.

Proteins. 2004 Oct 1;57(1):99-108.

PMID:
15326596
[PubMed - indexed for MEDLINE]
9.

Topology, tinkering and evolution of the human transcription factor network.

Rodriguez-Caso C, Medina MA, Solé RV.

FEBS J. 2005 Dec;272(24):6423-34.

PMID:
16336278
[PubMed - indexed for MEDLINE]
Free Article
10.

Databases of protein-protein interactions and complexes.

Ooi HS, Schneider G, Chan YL, Lim TT, Eisenhaber B, Eisenhaber F.

Methods Mol Biol. 2010;609:145-59. doi: 10.1007/978-1-60327-241-4_9. Review.

PMID:
20221918
[PubMed - indexed for MEDLINE]
11.

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.

Durek P, Walther D.

BMC Syst Biol. 2008 Nov 25;2:100. doi: 10.1186/1752-0509-2-100.

PMID:
19032748
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Dynamic proteomics in modeling of the living cell. Protein-protein interactions.

Terentiev AA, Moldogazieva NT, Shaitan KV.

Biochemistry (Mosc). 2009 Dec;74(13):1586-607. Review.

PMID:
20210711
[PubMed - indexed for MEDLINE]
Free Article
13.

A complex-centric view of protein network evolution.

Yosef N, Kupiec M, Ruppin E, Sharan R.

Nucleic Acids Res. 2009 Jul;37(12):e88. doi: 10.1093/nar/gkp414. Epub 2009 May 22.

PMID:
19465379
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Defining a modular signalling network from the fly interactome.

Baudot A, Angelelli JB, Guénoche A, Jacq B, Brun C.

BMC Syst Biol. 2008 May 19;2:45. doi: 10.1186/1752-0509-2-45.

PMID:
18489752
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Comparative interactomics.

Cesareni G, Ceol A, Gavrila C, Palazzi LM, Persico M, Schneider MV.

FEBS Lett. 2005 Mar 21;579(8):1828-33. Review.

PMID:
15763559
[PubMed - indexed for MEDLINE]
Free Article
16.

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

Sardiu ME, Florens L, Washburn MP.

J Proteome Res. 2009 Jun;8(6):2944-52. doi: 10.1021/pr900073d.

PMID:
19317493
[PubMed - indexed for MEDLINE]
17.

Bacteriome.org--an integrated protein interaction database for E. coli.

Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16.

PMID:
17942431
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Biosynthetic potentials from species-specific metabolic networks.

Basler G, Nikoloski Z, Ebenhöh O, Handorf T.

Genome Inform. 2008;20:135-48.

PMID:
19425129
[PubMed - indexed for MEDLINE]
Free Article
19.

Protein evolution on a human signaling network.

Cui Q, Purisima EO, Wang E.

BMC Syst Biol. 2009 Feb 18;3:21. doi: 10.1186/1752-0509-3-21.

PMID:
19226461
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Protein networking: insights into global functional organization of proteomes.

Pieroni E, de la Fuente van Bentem S, Mancosu G, Capobianco E, Hirt H, de la Fuente A.

Proteomics. 2008 Feb;8(4):799-816. doi: 10.1002/pmic.200700767. Review.

PMID:
18297653
[PubMed - indexed for MEDLINE]

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