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Results: 1 to 20 of 87

1.

Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages.

Del Sol A, Araúzo-Bravo MJ, Amoros D, Nussinov R.

Genome Biol. 2007;8(5):R92.

PMID:
17531094
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The modular organization of domain structures: insights into protein-protein binding.

del Sol A, Carbonell P.

PLoS Comput Biol. 2007 Dec;3(12):e239.

PMID:
18069884
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Residues crucial for maintaining short paths in network communication mediate signaling in proteins.

del Sol A, Fujihashi H, Amoros D, Nussinov R.

Mol Syst Biol. 2006;2:2006.0019. Epub 2006 May 2.

PMID:
16738564
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Computational modeling of allosteric regulation in the hsp90 chaperones: a statistical ensemble analysis of protein structure networks and allosteric communications.

Blacklock K, Verkhivker GM.

PLoS Comput Biol. 2014 Jun 12;10(6):e1003679. doi: 10.1371/journal.pcbi.1003679. eCollection 2014 Jun.

PMID:
24922508
[PubMed - in process]
Free PMC Article
5.

The modular logic of signaling proteins: building allosteric switches from simple binding domains.

Lim WA.

Curr Opin Struct Biol. 2002 Feb;12(1):61-8. Review.

PMID:
11839491
[PubMed - indexed for MEDLINE]
6.

Modeling allosteric signal propagation using protein structure networks.

Park K, Kim D.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S23. doi: 10.1186/1471-2105-12-S1-S23.

PMID:
21342553
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Evolutionarily conserved networks of residues mediate allosteric communication in proteins.

Süel GM, Lockless SW, Wall MA, Ranganathan R.

Nat Struct Biol. 2003 Jan;10(1):59-69. Erratum in: Nat Struct Biol. 2003 Mar;10(3):232.

PMID:
12483203
[PubMed - indexed for MEDLINE]
8.

Allosteric communication occurs via networks of tertiary and quaternary motions in proteins.

Daily MD, Gray JJ.

PLoS Comput Biol. 2009 Feb;5(2):e1000293. doi: 10.1371/journal.pcbi.1000293. Epub 2009 Feb 20.

PMID:
19229311
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Network scaling invariants help to elucidate basic topological principles of proteins.

Krishnan A, Giuliani A, Zbilut JP, Tomita M.

J Proteome Res. 2007 Oct;6(10):3924-34. Epub 2007 Sep 12.

PMID:
17850063
[PubMed - indexed for MEDLINE]
10.

Reprogramming control of an allosteric signaling switch through modular recombination.

Dueber JE, Yeh BJ, Chak K, Lim WA.

Science. 2003 Sep 26;301(5641):1904-8.

PMID:
14512628
[PubMed - indexed for MEDLINE]
Free Article
11.

Modularity and homology: modelling of the titin type I modules and their interfaces.

Amodeo P, Fraternali F, Lesk AM, Pastore A.

J Mol Biol. 2001 Aug 10;311(2):283-96.

PMID:
11478861
[PubMed - indexed for MEDLINE]
12.

On the detection of functionally coherent groups of protein domains with an extension to protein annotation.

McLaughlin WA, Chen K, Hou T, Wang W.

BMC Bioinformatics. 2007 Oct 16;8:390.

PMID:
17937820
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Variations in clique and community patterns in protein structures during allosteric communication: investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes.

Ghosh A, Vishveshwara S.

Biochemistry. 2008 Nov 4;47(44):11398-407. doi: 10.1021/bi8007559. Epub 2008 Oct 9.

PMID:
18842003
[PubMed - indexed for MEDLINE]
14.

RGS proteins: Swiss army knives in seven-transmembrane domain receptor signaling networks.

Heximer SP, Blumer KJ.

Sci STKE. 2007 Jan 23;2007(370):pe2.

PMID:
17244887
[PubMed - indexed for MEDLINE]
15.

Structural basis of protein-protein interactions.

Liddington RC.

Methods Mol Biol. 2004;261:3-14. Review.

PMID:
15064446
[PubMed - indexed for MEDLINE]
16.

Scalable rule-based modelling of allosteric proteins and biochemical networks.

Ollivier JF, Shahrezaei V, Swain PS.

PLoS Comput Biol. 2010 Nov 4;6(11):e1000975. doi: 10.1371/journal.pcbi.1000975.

PMID:
21079669
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The modular architecture of protein-protein binding interfaces.

Reichmann D, Rahat O, Albeck S, Meged R, Dym O, Schreiber G.

Proc Natl Acad Sci U S A. 2005 Jan 4;102(1):57-62. Epub 2004 Dec 23.

PMID:
15618400
[PubMed - indexed for MEDLINE]
Free PMC Article
18.
19.

Structural and functional energetic linkages in allosteric regulation of muscle pyruvate kinase.

Lee JC, Herman P.

Methods Enzymol. 2011;488:185-217. doi: 10.1016/B978-0-12-381268-1.00008-2.

PMID:
21195229
[PubMed - indexed for MEDLINE]
20.

Exploring allosteric coupling in the alpha-subunit of heterotrimeric G proteins using evolutionary and ensemble-based approaches.

Sayar K, Uğur O, Liu T, Hilser VJ, Onaran O.

BMC Struct Biol. 2008 May 2;8:23. doi: 10.1186/1472-6807-8-23.

PMID:
18454845
[PubMed - indexed for MEDLINE]
Free PMC Article

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