Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 90

1.

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database.

Jiménez JL, Hegemann B, Hutchins JR, Peters JM, Durbin R.

Genome Biol. 2007;8(5):R90.

PMID:
17521420
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

MODBASE, a database of annotated comparative protein structure models, and associated resources.

Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D217-22.

PMID:
14681398
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Phospho.ELM: a database of phosphorylation sites--update 2011.

Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F.

Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. doi: 10.1093/nar/gkq1104. Epub 2010 Nov 9.

PMID:
21062810
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.

Teyra J, Doms A, Schroeder M, Pisabarro MT.

BMC Bioinformatics. 2006 Mar 2;7:104.

PMID:
16512892
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.

Zanzoni A, Carbajo D, Diella F, Gherardini PF, Tramontano A, Helmer-Citterich M, Via A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D268-71. doi: 10.1093/nar/gkq936. Epub 2010 Oct 21.

PMID:
20965970
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comprehensive and reliable phosphorylation site mapping of individual phosphoproteins by combination of multiple stage mass spectrometric analysis with a target-decoy database search.

Han G, Ye M, Jiang X, Chen R, Ren J, Xue Y, Wang F, Song C, Yao X, Zou H.

Anal Chem. 2009 Jul 15;81(14):5794-805. doi: 10.1021/ac900702g.

PMID:
19522514
[PubMed - indexed for MEDLINE]
7.

NetworKIN: a resource for exploring cellular phosphorylation networks.

Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K, Bork P, Yaffe MB, Pawson T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D695-9. Epub 2007 Nov 2.

PMID:
17981841
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.

Durek P, Schudoma C, Weckwerth W, Selbig J, Walther D.

BMC Bioinformatics. 2009 Apr 21;10:117. doi: 10.1186/1471-2105-10-117.

PMID:
19383128
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Structural descriptor database: a new tool for sequence-based functional site prediction.

Bernardes JS, Fernandez JH, Vasconcelos AT.

BMC Bioinformatics. 2008 Nov 25;9:492. doi: 10.1186/1471-2105-9-492.

PMID:
19032768
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.

Nühse TS, Stensballe A, Jensen ON, Peck SC.

Plant Cell. 2004 Sep;16(9):2394-405. Epub 2004 Aug 12.

PMID:
15308754
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Phosphoproteomic analysis of the mouse brain cytosol reveals a predominance of protein phosphorylation in regions of intrinsic sequence disorder.

Collins MO, Yu L, Campuzano I, Grant SG, Choudhary JS.

Mol Cell Proteomics. 2008 Jul;7(7):1331-48. doi: 10.1074/mcp.M700564-MCP200. Epub 2008 Apr 3.

PMID:
18388127
[PubMed - indexed for MEDLINE]
Free Article
12.

3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.

Fleming K, Müller A, MacCallum RM, Sternberg MJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50.

PMID:
14681404
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

PMID:
18282303
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information.

Levy ED, Michnick SW, Landry CR.

Philos Trans R Soc Lond B Biol Sci. 2012 Sep 19;367(1602):2594-606. doi: 10.1098/rstb.2012.0078.

PMID:
22889910
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.

Zanzoni A, Ausiello G, Via A, Gherardini PF, Helmer-Citterich M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D229-31. Epub 2006 Nov 16.

PMID:
17142231
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

PeptiSite: a structural database of peptide binding sites in 4D.

Acharya C, Kufareva I, Ilatovskiy AV, Abagyan R.

Biochem Biophys Res Commun. 2014 Mar 21;445(4):717-23. doi: 10.1016/j.bbrc.2013.12.132. Epub 2014 Jan 6.

PMID:
24406170
[PubMed - indexed for MEDLINE]
17.

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.

Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ.

BMC Bioinformatics. 2004 Jun 22;5:79.

PMID:
15212693
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Phospho.ELM: a database of phosphorylation sites--update 2008.

Diella F, Gould CM, Chica C, Via A, Gibson TJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. Epub 2007 Oct 25.

PMID:
17962309
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Discovery of phosphorylation motif mixtures in phosphoproteomics data.

Ritz A, Shakhnarovich G, Salomon AR, Raphael BJ.

Bioinformatics. 2009 Jan 1;25(1):14-21. doi: 10.1093/bioinformatics/btn569. Epub 2008 Nov 7.

PMID:
18996944
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites.

Gnad F, Ren S, Cox J, Olsen JV, Macek B, Oroshi M, Mann M.

Genome Biol. 2007;8(11):R250.

PMID:
18039369
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk