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Results: 1 to 20 of 115

1.

Exon arrays provide accurate assessments of gene expression.

Kapur K, Xing Y, Ouyang Z, Wong WH.

Genome Biol. 2007;8(5):R82.

PMID:
17504534
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Probe selection and expression index computation of Affymetrix Exon Arrays.

Xing Y, Kapur K, Wong WH.

PLoS One. 2006 Dec 20;1:e88.

PMID:
17183719
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

PMID:
18990248
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Assessing the conservation of mammalian gene expression using high-density exon arrays.

Xing Y, Ouyang Z, Kapur K, Scott MP, Wong WH.

Mol Biol Evol. 2007 Jun;24(6):1283-5. Epub 2007 Mar 25. Erratum in: Mol Biol Evol. 2007 Jul;24(7):1577.

PMID:
17387099
[PubMed - indexed for MEDLINE]
Free Article
5.

Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies.

Laajala E, Aittokallio T, Lahesmaa R, Elo LL.

Genome Biol. 2009;10(7):R77. doi: 10.1186/gb-2009-10-7-r77. Epub 2009 Jul 16.

PMID:
19607685
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Cross-hybridization modeling on Affymetrix exon arrays.

Kapur K, Jiang H, Xing Y, Wong WH.

Bioinformatics. 2008 Dec 15;24(24):2887-93. doi: 10.1093/bioinformatics/btn571. Epub 2008 Nov 4.

PMID:
18984598
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Experimental comparison and evaluation of the Affymetrix exon and U133Plus2 GeneChip arrays.

Abdueva D, Wing MR, Schaub B, Triche TJ.

PLoS One. 2007 Sep 19;2(9):e913.

PMID:
17878948
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

FGX: a frequentist gene expression index for Affymetrix arrays.

Purutçuoglu V, Wit E.

Biostatistics. 2007 Apr;8(2):433-7. Epub 2006 Aug 24.

PMID:
16931537
[PubMed - indexed for MEDLINE]
Free Article
9.

Contrast normalization of oligonucleotide arrays.

Astrand M.

J Comput Biol. 2003;10(1):95-102.

PMID:
12676053
[PubMed - indexed for MEDLINE]
10.

Application of z-score transformation to Affymetrix data.

Cheadle C, Cho-Chung YS, Becker KG, Vawter MP.

Appl Bioinformatics. 2003;2(4):209-17.

PMID:
15130792
[PubMed - indexed for MEDLINE]
11.

Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling.

Bhattacharya S, Mariani TJ.

Nucleic Acids Res. 2005 Oct 13;33(18):e157.

PMID:
16224098
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Comparison of smoking-induced gene expression on Affymetrix Exon and 3'-based expression arrays.

Zhang X, Liu G, Lenburg ME, Spira A.

Genome Inform. 2007;18:247-57.

PMID:
18546492
[PubMed - indexed for MEDLINE]
13.

A comparison of Affymetrix gene expression arrays.

Robinson MD, Speed TP.

BMC Bioinformatics. 2007 Nov 15;8:449.

PMID:
18005448
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays.

Furusawa C, Ono N, Suzuki S, Agata T, Shimizu H, Yomo T.

Bioinformatics. 2009 Jan 1;25(1):36-41. doi: 10.1093/bioinformatics/btn570. Epub 2008 Oct 31.

PMID:
18977779
[PubMed - indexed for MEDLINE]
Free Article
15.

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

BMC Bioinformatics. 2007 Oct 25;8:412.

PMID:
17961233
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.

Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF 3rd, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK.

Nat Biotechnol. 2006 Jul;24(7):832-40. Epub 2006 Jul 2.

PMID:
16823376
[PubMed - indexed for MEDLINE]
17.

Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays.

Della Beffa C, Cordero F, Calogero RA.

BMC Genomics. 2008 Nov 28;9:571. doi: 10.1186/1471-2164-9-571.

PMID:
19040723
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.

Liu X, Gao Z, Zhang L, Rattray M.

BMC Bioinformatics. 2013 Feb 5;14:39. doi: 10.1186/1471-2105-14-39.

PMID:
23379655
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Alternative mapping of probes to genes for Affymetrix chips.

Gautier L, Møller M, Friis-Hansen L, Knudsen S.

BMC Bioinformatics. 2004 Aug 14;5:111.

PMID:
15310390
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide analysis of antisense transcription with Affymetrix exon array.

Ge X, Rubinstein WS, Jung YC, Wu Q.

BMC Genomics. 2008 Jan 22;9:27. doi: 10.1186/1471-2164-9-27.

PMID:
18211689
[PubMed - indexed for MEDLINE]
Free PMC Article

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