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Results: 1 to 20 of 105

1.

An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data.

Okoniewski MJ, Yates T, Dibben S, Miller CJ.

Genome Biol. 2007;8(5):R79.

PMID:
17498294
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.

Yates T, Okoniewski MJ, Miller CJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D780-6. Epub 2007 Oct 11.

PMID:
17932061
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.

Yu H, Wang F, Tu K, Xie L, Li YY, Li YX.

BMC Bioinformatics. 2007 Jun 11;8:194.

PMID:
17559689
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.

Sanges R, Cordero F, Calogero RA.

Bioinformatics. 2007 Dec 15;23(24):3406-8. Epub 2007 Sep 17.

PMID:
17875544
[PubMed - indexed for MEDLINE]
Free Article
5.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

PMID:
18990248
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

ExonMiner: Web service for analysis of GeneChip Exon array data.

Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S.

BMC Bioinformatics. 2008 Nov 26;9:494. doi: 10.1186/1471-2105-9-494.

PMID:
19036125
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Identifying differential exon splicing using linear models and correlation coefficients.

Shah SH, Pallas JA.

BMC Bioinformatics. 2009 Jan 20;10:26. doi: 10.1186/1471-2105-10-26.

PMID:
19154578
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Using the Ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.15. doi: 10.1002/0471250953.bi0115s16.

PMID:
18428779
[PubMed - indexed for MEDLINE]
9.

Cross-hybridization modeling on Affymetrix exon arrays.

Kapur K, Jiang H, Xing Y, Wong WH.

Bioinformatics. 2008 Dec 15;24(24):2887-93. doi: 10.1093/bioinformatics/btn571. Epub 2008 Nov 4.

PMID:
18984598
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays.

Yeung JM, Sham PC, Chan AS, Cherny SS.

BMC Genomics. 2008 Dec 31;9:636. doi: 10.1186/1471-2164-9-636.

PMID:
19117518
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.

Liu X, Gao Z, Zhang L, Rattray M.

BMC Bioinformatics. 2013 Feb 5;14:39. doi: 10.1186/1471-2105-14-39.

PMID:
23379655
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.

Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A.

BMC Bioinformatics. 2009 Feb 6;10:50. doi: 10.1186/1471-2105-10-50.

PMID:
19200358
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

[Construction of standard human transcript dataset based on RefSeq and human genome sequence database].

Li ZF, Li YJ, Zhao DS, Hang XY, Wang ZZ, Luo ZG, Zhang CG.

Yi Chuan. 2006 Mar;28(3):329-33. Chinese.

PMID:
16551601
[PubMed - indexed for MEDLINE]
14.

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.

Zhang JD, Wiemann S.

Bioinformatics. 2009 Jun 1;25(11):1470-1. doi: 10.1093/bioinformatics/btp167. Epub 2009 Mar 23.

PMID:
19307239
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

SNPbox: web-based high-throughput primer design from gene to genome.

Weckx S, De Rijk P, Van Broeckhoven C, Del-Favero J.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W170-2.

PMID:
15215373
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.

Emig D, Salomonis N, Baumbach J, Lengauer T, Conklin BR, Albrecht M.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W755-62. doi: 10.1093/nar/gkq405. Epub 2010 May 31.

PMID:
20513647
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High correspondence between Affymetrix exon and standard expression arrays.

Okoniewski MJ, Hey Y, Pepper SD, Miller CJ.

Biotechniques. 2007 Feb;42(2):181-5.

PMID:
17373482
[PubMed - indexed for MEDLINE]
Free Article
18.

DDBJ with new system and face.

Sugawara H, Ogasawara O, Okubo K, Gojobori T, Tateno Y.

Nucleic Acids Res. 2008 Jan;36(Database issue):D22-4. Epub 2007 Oct 25.

PMID:
17962300
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.

Chiang T, Li N, Orchard S, Kerrien S, Hermjakob H, Gentleman R, Huber W.

Bioinformatics. 2008 Apr 15;24(8):1100-1. Epub 2007 Nov 7.

PMID:
17989096
[PubMed - indexed for MEDLINE]
Free Article
20.

easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.

Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.

BMC Bioinformatics. 2008 Oct 14;9:432. doi: 10.1186/1471-2105-9-432.

PMID:
18851762
[PubMed - indexed for MEDLINE]
Free PMC Article

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