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Results: 1 to 20 of 71

1.

Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition.

Lefébure T, Stanhope MJ.

Genome Biol. 2007;8(5):R71.

PMID:
17475002
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes.

Orsi RH, Sun Q, Wiedmann M.

BMC Evol Biol. 2008 Aug 12;8:233. doi: 10.1186/1471-2148-8-233.

PMID:
18700032
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter.

Lefébure T, Stanhope MJ.

Genome Res. 2009 Jul;19(7):1224-32. doi: 10.1101/gr.089250.108. Epub 2009 Mar 20.

PMID:
19304960
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Phylogenomic analysis of natural selection pressure in Streptococcus genomes.

Anisimova M, Bielawski J, Dunn K, Yang Z.

BMC Evol Biol. 2007 Aug 30;7:154.

PMID:
17760998
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Population genetics and evolution of the pan-genome of Streptococcus pneumoniae.

Muzzi A, Donati C.

Int J Med Microbiol. 2011 Dec;301(8):619-22. doi: 10.1016/j.ijmm.2011.09.008. Epub 2011 Oct 13. Review.

PMID:
22000739
[PubMed - indexed for MEDLINE]
6.

Interplay of recombination and selection in the genomes of Chlamydia trachomatis.

Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD.

Biol Direct. 2011 May 26;6:28. doi: 10.1186/1745-6150-6-28.

PMID:
21615910
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes.

Soyer Y, Orsi RH, Rodriguez-Rivera LD, Sun Q, Wiedmann M.

BMC Evol Biol. 2009 Nov 14;9:264. doi: 10.1186/1471-2148-9-264.

PMID:
19912661
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Functional bias of positively selected genes in Streptococcus genomes.

Suzuki H, Stanhope MJ.

Infect Genet Evol. 2012 Mar;12(2):274-7. doi: 10.1016/j.meegid.2011.11.004. Epub 2011 Dec 3.

PMID:
22155358
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans.

Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ.

Mol Biol Evol. 2013 Apr;30(4):881-93. doi: 10.1093/molbev/mss278. Epub 2012 Dec 10.

PMID:
23228887
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution.

Suzuki H, Lefébure T, Hubisz MJ, Pavinski Bitar P, Lang P, Siepel A, Stanhope MJ.

Genome Biol Evol. 2011;3:168-85. doi: 10.1093/gbe/evr006. Epub 2011 Jan 31.

PMID:
21282711
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis.

Ward PN, Holden MT, Leigh JA, Lennard N, Bignell A, Barron A, Clark L, Quail MA, Woodward J, Barrell BG, Egan SA, Field TR, Maskell D, Kehoe M, Dowson CG, Chanter N, Whatmore AM, Bentley SD, Parkhill J.

BMC Genomics. 2009 Jan 28;10:54. doi: 10.1186/1471-2164-10-54.

PMID:
19175920
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Comparative genomics of streptococcal species.

Ferretti JJ, Ajdic D, McShan WM.

Indian J Med Res. 2004 May;119 Suppl:1-6.

PMID:
15232152
[PubMed - indexed for MEDLINE]
13.

Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae.

Tettelin H, Masignani V, Cieslewicz MJ, Eisen JA, Peterson S, Wessels MR, Paulsen IT, Nelson KE, Margarit I, Read TD, Madoff LC, Wolf AM, Beanan MJ, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Kolonay JF, Madupu R, Lewis MR, Radune D, Fedorova NB, Scanlan D, Khouri H, Mulligan S, Carty HA, Cline RT, Van Aken SE, Gill J, Scarselli M, Mora M, Iacobini ET, Brettoni C, Galli G, Mariani M, Vegni F, Maione D, Rinaudo D, Rappuoli R, Telford JL, Kasper DL, Grandi G, Fraser CM.

Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12391-6. Epub 2002 Aug 28.

PMID:
12200547
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparative genomics of Mycoplasma: analysis of conserved essential genes and diversity of the pan-genome.

Liu W, Fang L, Li M, Li S, Guo S, Luo R, Feng Z, Li B, Zhou Z, Shao G, Chen H, Xiao S.

PLoS One. 2012;7(4):e35698. doi: 10.1371/journal.pone.0035698. Epub 2012 Apr 20.

PMID:
22536428
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae.

Lefébure T, Richards VP, Lang P, Pavinski-Bitar P, Stanhope MJ.

PLoS One. 2012;7(5):e37607. doi: 10.1371/journal.pone.0037607. Epub 2012 May 30.

PMID:
22666370
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Gene gain and gene loss in streptococcus: is it driven by habitat?

Marri PR, Hao W, Golding GB.

Mol Biol Evol. 2006 Dec;23(12):2379-91. Epub 2006 Sep 11.

PMID:
16966682
[PubMed - indexed for MEDLINE]
Free Article
17.

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept.

Lefébure T, Bitar PD, Suzuki H, Stanhope MJ.

Genome Biol Evol. 2010;2:646-55. doi: 10.1093/gbe/evq048. Epub 2010 Aug 4.

PMID:
20688752
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli.

Didelot X, Méric G, Falush D, Darling AE.

BMC Genomics. 2012 Jun 19;13:256. doi: 10.1186/1471-2164-13-256.

PMID:
22712577
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content.

Maruyama F, Kobata M, Kurokawa K, Nishida K, Sakurai A, Nakano K, Nomura R, Kawabata S, Ooshima T, Nakai K, Hattori M, Hamada S, Nakagawa I.

BMC Genomics. 2009 Aug 5;10:358. doi: 10.1186/1471-2164-10-358.

PMID:
19656368
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Replacing and additive horizontal gene transfer in Streptococcus.

Choi SC, Rasmussen MD, Hubisz MJ, Gronau I, Stanhope MJ, Siepel A.

Mol Biol Evol. 2012 Nov;29(11):3309-20. doi: 10.1093/molbev/mss138. Epub 2012 May 21.

PMID:
22617954
[PubMed - indexed for MEDLINE]
Free PMC Article

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