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Results: 1 to 20 of 84

1.

ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes.

King BR, Guda C.

Genome Biol. 2007;8(5):R68.

PMID:
17472741
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes.

King BR, Vural S, Pandey S, Barteau A, Guda C.

BMC Res Notes. 2012 Jul 10;5:351. doi: 10.1186/1756-0500-5-351.

PMID:
22780965
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction.

Shen HB, Yang J, Chou KC.

Amino Acids. 2007 Jul;33(1):57-67. Epub 2007 Jan 19.

PMID:
17235453
[PubMed - indexed for MEDLINE]
4.

Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers.

Chou KC, Shen HB.

J Proteome Res. 2006 Aug;5(8):1888-97.

PMID:
16889410
[PubMed - indexed for MEDLINE]
5.

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.

Lin HN, Chen CT, Sung TY, Ho SY, Hsu WL.

BMC Bioinformatics. 2009 Dec 3;10 Suppl 15:S8. doi: 10.1186/1471-2105-10-S15-S8.

PMID:
19958518
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Organelle DB: a cross-species database of protein localization and function.

Wiwatwattana N, Kumar A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D598-604.

PMID:
15608270
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Organelle DB: an updated resource of eukaryotic protein localization and function.

Wiwatwattana N, Landau CM, Cope GJ, Harp GA, Kumar A.

Nucleic Acids Res. 2007 Jan;35(Database issue):D810-4. Epub 2006 Nov 27.

PMID:
17130152
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Sample preparation project for the subcellular proteome of mouse liver.

Song Y, Hao Y, Sun A, Li T, Li W, Guo L, Yan Y, Geng C, Chen N, Zhong F, Wei H, Jiang Y, He F.

Proteomics. 2006 Oct;6(19):5269-77.

PMID:
16941572
[PubMed - indexed for MEDLINE]
9.

Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data.

Gaston D, Tsaousis AD, Roger AJ.

Methods Enzymol. 2009;457:21-47. doi: 10.1016/S0076-6879(09)05002-2. Review.

PMID:
19426860
[PubMed - indexed for MEDLINE]
10.

Characterisation of organellar proteomes: a guide to subcellular proteomic fractionation and analysis.

Ho E, Hayen A, Wilkins MR.

Proteomics. 2006 Nov;6(21):5746-57.

PMID:
17068763
[PubMed - indexed for MEDLINE]
11.

Isolation of subcellular organelles and structures.

Michelsen U, von Hagen J.

Methods Enzymol. 2009;463:305-28. doi: 10.1016/S0076-6879(09)63019-6. Review.

PMID:
19892179
[PubMed - indexed for MEDLINE]
12.

Quantitative proteomic analysis to profile dynamic changes in the spatial distribution of cellular proteins.

Yan W, Hwang D, Aebersold R.

Methods Mol Biol. 2008;432:389-401. doi: 10.1007/978-1-59745-028-7_26.

PMID:
18370032
[PubMed - indexed for MEDLINE]
13.

Complementary methods to assist subcellular fractionation in organellar proteomics.

Gauthier DJ, Lazure C.

Expert Rev Proteomics. 2008 Aug;5(4):603-17. doi: 10.1586/14789450.5.4.603. Review.

PMID:
18761470
[PubMed - indexed for MEDLINE]
14.

HECTAR: a method to predict subcellular targeting in heterokonts.

Gschloessl B, Guermeur Y, Cock JM.

BMC Bioinformatics. 2008 Sep 23;9:393. doi: 10.1186/1471-2105-9-393.

PMID:
18811941
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The prediction of protein subcellular localization from sequence: a shortcut to functional genome annotation.

Casadio R, Martelli PL, Pierleoni A.

Brief Funct Genomic Proteomic. 2008 Jan;7(1):63-73. doi: 10.1093/bfgp/eln003. Epub 2008 Feb 18. Review.

PMID:
18283051
[PubMed - indexed for MEDLINE]
Free Article
16.

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.

PMID:
17949885
[PubMed - indexed for MEDLINE]
17.

Extent of N-terminal modifications in cytosolic proteins from eukaryotes.

Martinez A, Traverso JA, Valot B, Ferro M, Espagne C, Ephritikhine G, Zivy M, Giglione C, Meinnel T.

Proteomics. 2008 Jul;8(14):2809-31. doi: 10.1002/pmic.200701191.

PMID:
18655050
[PubMed - indexed for MEDLINE]
18.

Proteomics of regulated secretory organelles.

Brunner Y, Schvartz D, Couté Y, Sanchez JC.

Mass Spectrom Rev. 2009 Sep-Oct;28(5):844-67. doi: 10.1002/mas.20211. Review.

PMID:
19301366
[PubMed - indexed for MEDLINE]
19.

Methods for imaging and analyses of intracellular organelles using fluorescent and luminescent proteins.

Takeuchi M, Ozawa T.

Anal Sci. 2007 Jan;23(1):25-9. Review.

PMID:
17213619
[PubMed - indexed for MEDLINE]
Free Article
20.

The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium.

Vissers JP, Pons S, Hulin A, Tissier R, Berdeaux A, Connolly JB, Langridge JI, Geromanos SJ, Ghaleh B.

J Chromatogr B Analyt Technol Biomed Life Sci. 2009 May 1;877(13):1317-26. doi: 10.1016/j.jchromb.2008.10.024. Epub 2008 Nov 1.

PMID:
18996061
[PubMed - indexed for MEDLINE]

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