Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 60

1.

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome.

Small KS, Brudno M, Hill MM, Sidow A.

Genome Biol. 2007;8(3):R41.

PMID:
17374142
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.

Vinson JP, Jaffe DB, O'Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N, Satou Y, Nusbaum C, Birren B, Galagan JE, Lander ES.

Genome Res. 2005 Aug;15(8):1127-35.

PMID:
16077012
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi.

Kim JH, Waterman MS, Li LM.

Genome Res. 2007 Jul;17(7):1101-10. Epub 2007 Jun 13.

PMID:
17567986
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Polymorphism due to multiple amino acid substitutions at a codon site within Ciona savignyi.

Donmez N, Bazykin GA, Brudno M, Kondrashov AS.

Genetics. 2009 Feb;181(2):685-90. doi: 10.1534/genetics.108.097535. Epub 2008 Dec 15.

PMID:
19087959
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Extreme genomic variation in a natural population.

Small KS, Brudno M, Hill MM, Sidow A.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5698-703. Epub 2007 Mar 19.

PMID:
17372217
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE.

Plant J. 2007 Jun;50(6):1063-78. Epub 2007 May 3.

PMID:
17488239
[PubMed - indexed for MEDLINE]
7.

The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution.

Hill MM, Broman KW, Stupka E, Smith WC, Jiang D, Sidow A.

Genome Res. 2008 Aug;18(8):1369-79. doi: 10.1101/gr.078576.108. Epub 2008 Jun 2.

PMID:
18519652
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Polymorphism and divergence within the ascidian genus Ciona.

Nydam ML, Harrison RG.

Mol Phylogenet Evol. 2010 Aug;56(2):718-26. doi: 10.1016/j.ympev.2010.03.042. Epub 2010 Apr 18.

PMID:
20403444
[PubMed - indexed for MEDLINE]
9.

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies.

Huang S, Chen Z, Huang G, Yu T, Yang P, Li J, Fu Y, Yuan S, Chen S, Xu A.

Genome Res. 2012 Aug;22(8):1581-8. doi: 10.1101/gr.133652.111. Epub 2012 May 3.

PMID:
22555592
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Mining for single nucleotide polymorphisms in pig genome sequence data.

Kerstens HH, Kollers S, Kommadath A, Del Rosario M, Dibbits B, Kinders SM, Crooijmans RP, Groenen MA.

BMC Genomics. 2009 Jan 6;10:4. doi: 10.1186/1471-2164-10-4.

PMID:
19126189
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Minos transposon causes germline transgenesis of the ascidian Ciona savignyi.

Matsuoka T, Awazu S, Satoh N, Sasakura Y.

Dev Growth Differ. 2004 Jun;46(3):249-55.

PMID:
15206956
[PubMed - indexed for MEDLINE]
12.

Inverse correlation of population similarity and introduction date for invasive ascidians.

Silva N, Smith WC.

PLoS One. 2008 Jun 25;3(6):e2552. doi: 10.1371/journal.pone.0002552.

PMID:
18575620
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A dataset generator for whole genome shotgun sequencing.

Myers G.

Proc Int Conf Intell Syst Mol Biol. 1999:202-10.

PMID:
10786303
[PubMed - indexed for MEDLINE]
14.

Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes.

Dohm JC, Lange C, Reinhardt R, Himmelbauer H.

Plant J. 2009 Jan;57(1):14-26. doi: 10.1111/j.1365-313X.2008.03665.x. Epub 2008 Aug 29.

PMID:
18764921
[PubMed - indexed for MEDLINE]
15.

Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools.

Wicker T, Krattinger SG, Lagudah ES, Komatsuda T, Pourkheirandish M, Matsumoto T, Cloutier S, Reiser L, Kanamori H, Sato K, Perovic D, Stein N, Keller B.

Plant Physiol. 2009 Jan;149(1):258-70. doi: 10.1104/pp.108.129734. Epub 2008 Nov 14.

PMID:
19011002
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Tracembler--software for in-silico chromosome walking in unassembled genomes.

Dong Q, Wilkerson MD, Brendel V.

BMC Bioinformatics. 2007 May 9;8:151.

PMID:
17490482
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Identification and characterization of sea squirt telomerase reverse transcriptase.

Li Y, Yates JA, Chen JJ.

Gene. 2007 Oct 1;400(1-2):16-24. Epub 2007 Jun 5.

PMID:
17601686
[PubMed - indexed for MEDLINE]
18.

ABySS: a parallel assembler for short read sequence data.

Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I.

Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.

PMID:
19251739
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Preparation of a phage DNA fragment library for whole genome shotgun sequencing.

Summer EJ.

Methods Mol Biol. 2009;502:27-46. doi: 10.1007/978-1-60327-565-1_4.

PMID:
19082550
[PubMed - indexed for MEDLINE]
20.

The complete genome of an individual by massively parallel DNA sequencing.

Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

Nature. 2008 Apr 17;452(7189):872-6. doi: 10.1038/nature06884.

PMID:
18421352
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk