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Results: 1 to 20 of 90

1.

GOTax: investigating biological processes and biochemical activities along the taxonomic tree.

Schlicker A, Rahnenführer J, Albrecht M, Lengauer T, Domingues FS.

Genome Biol. 2007;8(3):R33.

PMID:
17346342
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.

Martínez-Cruz LA, Rubio A, Martínez-Chantar ML, Labarga A, Barrio I, Podhorski A, Segura V, Sevilla Campo JL, Avila MA, Mato JM.

Bioinformatics. 2003 Nov 1;19(16):2158-60.

PMID:
14594726
[PubMed - indexed for MEDLINE]
Free Article
3.

SALAD database: a motif-based database of protein annotations for plant comparative genomics.

Mihara M, Itoh T, Izawa T.

Nucleic Acids Res. 2010 Jan;38(Database issue):D835-42. doi: 10.1093/nar/gkp831. Epub 2009 Oct 23.

PMID:
19854933
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A new measure for functional similarity of gene products based on Gene Ontology.

Schlicker A, Domingues FS, Rahnenführer J, Lengauer T.

BMC Bioinformatics. 2006 Jun 15;7:302.

PMID:
16776819
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

InterPro and InterProScan: tools for protein sequence classification and comparison.

Mulder N, Apweiler R.

Methods Mol Biol. 2007;396:59-70.

PMID:
18025686
[PubMed - indexed for MEDLINE]
6.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Applications of Tree-Maps to hierarchical biological data.

McConnell P, Johnson K, Lin S.

Bioinformatics. 2002 Sep;18(9):1278-9.

PMID:
12217926
[PubMed - indexed for MEDLINE]
Free Article
8.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

PMID:
15647305
[PubMed - indexed for MEDLINE]
Free Article
9.

PROTEIOS: an open source proteomics initiative.

Gärdén P, Alm R, Häkkinen J.

Bioinformatics. 2005 May 1;21(9):2085-7. Epub 2005 Feb 3.

PMID:
15691852
[PubMed - indexed for MEDLINE]
Free Article
10.

Phytome: a platform for plant comparative genomics.

Hartmann S, Lu D, Phillips J, Vision TJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D724-30.

PMID:
16381967
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

PLAZA: a comparative genomics resource to study gene and genome evolution in plants.

Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K.

Plant Cell. 2009 Dec;21(12):3718-31. doi: 10.1105/tpc.109.071506. Epub 2009 Dec 29.

PMID:
20040540
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.

Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I.

Bioinformatics. 2007 Mar 15;23(6):764-6. Epub 2007 Jan 17.

PMID:
17234642
[PubMed - indexed for MEDLINE]
Free Article
13.

FUNYBASE: a FUNgal phYlogenomic dataBASE.

Marthey S, Aguileta G, Rodolphe F, Gendrault A, Giraud T, Fournier E, Lopez-Villavicencio M, Gautier A, Lebrun MH, Chiapello H.

BMC Bioinformatics. 2008 Oct 27;9:456. doi: 10.1186/1471-2105-9-456.

PMID:
18954438
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

J Proteome Res. 2009 Jun;8(6):3037-43. doi: 10.1021/pr900189c.

PMID:
19354269
[PubMed - indexed for MEDLINE]
15.

DEPD: a novel database for differentially expressed proteins.

He QY, Cao J, Liu XH, Li MX, Liu YS, Xie JY, Liang SP.

Bioinformatics. 2005 Sep 15;21(18):3694-6. Epub 2005 Jul 14.

PMID:
16020467
[PubMed - indexed for MEDLINE]
Free Article
16.

PROMPT: a protein mapping and comparison tool.

Schmidt T, Frishman D.

BMC Bioinformatics. 2006 Jul 4;7:331.

PMID:
16817977
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Visualizations for taxonomic and phylogenetic trees.

Parr CS, Lee B, Campbell D, Bederson BB.

Bioinformatics. 2004 Nov 22;20(17):2997-3004. Epub 2004 Jun 4.

PMID:
15180933
[PubMed - indexed for MEDLINE]
Free Article
18.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

PMID:
15723693
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

FunSimMat update: new features for exploring functional similarity.

Schlicker A, Albrecht M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D244-8. doi: 10.1093/nar/gkp979. Epub 2009 Nov 18.

PMID:
19923227
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Haft DH, Selengut JD, Brinkac LM, Zafar N, White O.

Bioinformatics. 2005 Feb 1;21(3):293-306. Epub 2004 Sep 3.

PMID:
15347579
[PubMed - indexed for MEDLINE]
Free Article

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