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Results: 1 to 20 of 101

1.

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.

Kingsford CL, Ayanbule K, Salzberg SL.

Genome Biol. 2007;8(2):R22.

PMID:
17313685
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Prediction of transcriptional terminators in Bacillus subtilis and related species.

de Hoon MJ, Makita Y, Nakai K, Miyano S.

PLoS Comput Biol. 2005 Aug;1(3):e25. Epub 2005 Aug 12.

PMID:
16110342
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Prediction of transcription terminators in bacterial genomes.

Ermolaeva MD, Khalak HG, White O, Smith HO, Salzberg SL.

J Mol Biol. 2000 Aug 4;301(1):27-33.

PMID:
10926490
[PubMed - indexed for MEDLINE]
4.

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

d'Aubenton Carafa Y, Brody E, Thermes C.

J Mol Biol. 1990 Dec 20;216(4):835-58.

PMID:
1702475
[PubMed - indexed for MEDLINE]
5.

Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators.

Reynolds R, Chamberlin MJ.

J Mol Biol. 1992 Mar 5;224(1):53-63.

PMID:
1372366
[PubMed - indexed for MEDLINE]
6.

ARNold: a web tool for the prediction of Rho-independent transcription terminators.

Naville M, Ghuillot-Gaudeffroy A, Marchais A, Gautheret D.

RNA Biol. 2011 Jan-Feb;8(1):11-3. Epub 2011 Jan 1.

PMID:
21282983
[PubMed - indexed for MEDLINE]
Free Article
7.

Occurrence, divergence and evolution of intrinsic terminators across eubacteria.

Mitra A, Angamuthu K, Jayashree HV, Nagaraja V.

Genomics. 2009 Aug;94(2):110-6. doi: 10.1016/j.ygeno.2009.04.004. Epub 2009 Apr 23.

PMID:
19393739
[PubMed - indexed for MEDLINE]
Free Article
8.

Prediction of rho-independent transcriptional terminators in Escherichia coli.

Lesnik EA, Sampath R, Levene HB, Henderson TJ, McNeil JA, Ecker DJ.

Nucleic Acids Res. 2001 Sep 1;29(17):3583-94.

PMID:
11522828
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.

Livny J, Fogel MA, Davis BM, Waldor MK.

Nucleic Acids Res. 2005 Jul 26;33(13):4096-105. Print 2005.

PMID:
16049021
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide analysis of the intrinsic terminators of transcription across the genus Mycobacterium.

Mitra A, Angamuthu K, Nagaraja V.

Tuberculosis (Edinb). 2008 Nov;88(6):566-75. doi: 10.1016/j.tube.2008.06.004. Epub 2008 Sep 3.

PMID:
18768372
[PubMed - indexed for MEDLINE]
11.

Conserved economics of transcription termination in eubacteria.

Unniraman S, Prakash R, Nagaraja V.

Nucleic Acids Res. 2002 Feb 1;30(3):675-84.

PMID:
11809879
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators.

Reynolds R, Bermúdez-Cruz RM, Chamberlin MJ.

J Mol Biol. 1992 Mar 5;224(1):31-51.

PMID:
1372365
[PubMed - indexed for MEDLINE]
13.

High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs.

Livny J, Teonadi H, Livny M, Waldor MK.

PLoS One. 2008 Sep 12;3(9):e3197. doi: 10.1371/journal.pone.0003197. Erratum in: PLoS ONE. 2008;3(11). doi: 10.1371/annotation/a03e1870-1dd7-4c16-8c46-2268eeb2a50a.

PMID:
18787707
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them.

Brendel V, Hamm GH, Trifonov EN.

J Biomol Struct Dyn. 1986 Feb;3(4):705-23.

PMID:
3078109
[PubMed - indexed for MEDLINE]
15.

Rho-independent terminators without 3' poly-U tails from the early region of actinophage øC31.

Ingham CJ, Hunter IS, Smith MC.

Nucleic Acids Res. 1995 Feb 11;23(3):370-6.

PMID:
7885832
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.

Nardone J, Lee DU, Ansel KM, Rao A.

Nat Immunol. 2004 Aug;5(8):768-74. Review.

PMID:
15282556
[PubMed - indexed for MEDLINE]
17.

A computer algorithm for testing potential prokaryotic terminators.

Brendel V, Trifonov EN.

Nucleic Acids Res. 1984 May 25;12(10):4411-27.

PMID:
6374619
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

In silico characterization of DNA motifs with particular reference to promoters and terminators.

Lavigne R, Villegas A, Kropinksi AM.

Methods Mol Biol. 2009;502:113-29. doi: 10.1007/978-1-60327-565-1_8.

PMID:
19082554
[PubMed - indexed for MEDLINE]
19.

Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.

Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.

BMC Genomics. 2008 Feb 28;9:106. doi: 10.1186/1471-2164-9-106.

PMID:
18307801
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination.

Washio T, Sasayama J, Tomita M.

Nucleic Acids Res. 1998 Dec 1;26(23):5456-63.

PMID:
9826772
[PubMed - indexed for MEDLINE]
Free PMC Article

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