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Results: 1 to 20 of 102

1.

Genome re-annotation: a wiki solution?

Salzberg SL.

Genome Biol. 2007;8(1):102.

PMID:
17274839
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

959 Nematode Genomes: a semantic wiki for coordinating sequencing projects.

Kumar S, Schiffer PH, Blaxter M.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1295-300. doi: 10.1093/nar/gkr826. Epub 2011 Nov 3.

PMID:
22058131
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.

Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M.

Genome Res. 2008 Jan;18(1):188-96. Epub 2007 Nov 19.

PMID:
18025269
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

New bioinformatics tools for viral genome analyses at Viral Bioinformatics--Canada.

Esteban DJ, Da Silva M, Upton C.

Pharmacogenomics. 2005 Apr;6(3):271-80.

PMID:
16013958
[PubMed - indexed for MEDLINE]
5.

The Gene Wiki: community intelligence applied to human gene annotation.

Huss JW 3rd, Lindenbaum P, Martone M, Roberts D, Pizarro A, Valafar F, Hogenesch JB, Su AI.

Nucleic Acids Res. 2010 Jan;38(Database issue):D633-9. doi: 10.1093/nar/gkp760. Epub 2009 Sep 15.

PMID:
19755503
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

SNPedia: a wiki supporting personal genome annotation, interpretation and analysis.

Cariaso M, Lennon G.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1308-12. doi: 10.1093/nar/gkr798. Epub 2011 Dec 2.

PMID:
22140107
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genquire: genome annotation browser/editor.

Wilkinson MD, Block D, Crosby WL.

Bioinformatics. 2002 Oct;18(10):1398-9.

PMID:
12376386
[PubMed - indexed for MEDLINE]
Free Article
8.

PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes.

Chen GL, Chang YJ, Hsueh CH.

Bioinformatics. 2013 Nov 1;29(21):2683-9. doi: 10.1093/bioinformatics/btt482. Epub 2013 Aug 19.

PMID:
23958725
[PubMed - indexed for MEDLINE]
9.

Restauro-G: a rapid genome re-annotation system for comparative genomics.

Tamaki S, Arakawa K, Kono N, Tomita M.

Genomics Proteomics Bioinformatics. 2007 Feb;5(1):53-8.

PMID:
17572364
[PubMed - indexed for MEDLINE]
Free Article
10.

GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.

PMID:
16076887
[PubMed - indexed for MEDLINE]
Free Article
11.

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R.

Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.

PMID:
24293654
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

MUTAGEN: multi-user tool for annotating genomes.

Brügger K, Redder P, Skovgaard M.

Bioinformatics. 2003 Dec 12;19(18):2480-1.

PMID:
14668237
[PubMed - indexed for MEDLINE]
Free Article
13.

Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.

Doran AG, Creevey CJ.

BMC Bioinformatics. 2013 Feb 8;14:45. doi: 10.1186/1471-2105-14-45.

PMID:
23390980
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The Gene Wiki in 2011: community intelligence applied to human gene annotation.

Good BM, Clarke EL, de Alfaro L, Su AI.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1255-61. doi: 10.1093/nar/gkr925. Epub 2011 Nov 10.

PMID:
22075991
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome.

Tcherepanov V, Ehlers A, Upton C.

BMC Genomics. 2006 Jun 13;7:150.

PMID:
16772042
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.

Green ML, Karp PD.

BMC Bioinformatics. 2004 Jun 9;5:76.

PMID:
15189570
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information.

Lorenzi HA, Puiu D, Miller JR, Brinkac LM, Amedeo P, Hall N, Caler EV.

PLoS Negl Trop Dis. 2010 Jun 15;4(6):e716. doi: 10.1371/journal.pntd.0000716.

PMID:
20559563
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The UCSC Genome Browser database: update 2010.

Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D613-9. doi: 10.1093/nar/gkp939. Epub 2009 Nov 11.

PMID:
19906737
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

PMID:
17576678
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

Fong JH, Murphy TD, Pruitt KD.

BMC Genomics. 2013 Sep 25;14:654. doi: 10.1186/1471-2164-14-654.

PMID:
24063302
[PubMed - indexed for MEDLINE]
Free PMC Article

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