Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 150

1.

DarkHorse: a method for genome-wide prediction of horizontal gene transfer.

Podell S, Gaasterland T.

Genome Biol. 2007;8(2):R16.

PMID:
17274820
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

PMID:
18840280
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

[Methods for the identification of horizontal gene transfer (HGT) events and progress in related fields].

Li ZJ, Li HQ, Diao XM.

Yi Chuan. 2008 Sep;30(9):1108-14. Review. Chinese.

PMID:
18779166
[PubMed - indexed for MEDLINE]
4.

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

Dutilh BE, Huynen MA, Bruno WJ, Snel B.

J Mol Evol. 2004 May;58(5):527-39.

PMID:
15170256
[PubMed - indexed for MEDLINE]
5.

Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns.

Zaneveld JR, Nemergut DR, Knight R.

Microbiology. 2008 Jan;154(Pt 1):1-15. doi: 10.1099/mic.0.2007/011833-0. Review.

PMID:
18174121
[PubMed - indexed for MEDLINE]
Free Article
6.

Detection and quantitative assessment of horizontal gene transfer.

Zhaxybayeva O.

Methods Mol Biol. 2009;532:195-213. doi: 10.1007/978-1-60327-853-9_11.

PMID:
19271186
[PubMed - indexed for MEDLINE]
7.

Phylogenetic identification of lateral genetic transfer events.

Beiko RG, Hamilton N.

BMC Evol Biol. 2006 Feb 11;6:15.

PMID:
16472400
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Estimating the extent of horizontal gene transfer in metagenomic sequences.

Tamames J, Moya A.

BMC Genomics. 2008 Mar 24;9:136. doi: 10.1186/1471-2164-9-136.

PMID:
18366724
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A new computational method for the detection of horizontal gene transfer events.

Tsirigos A, Rigoutsos I.

Nucleic Acids Res. 2005 Feb 16;33(3):922-33. Print 2005.

PMID:
15716310
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Computational approaches to gene prediction.

Do JH, Choi DK.

J Microbiol. 2006 Apr;44(2):137-44. Review.

PMID:
16728949
[PubMed - indexed for MEDLINE]
Free Article
11.

Systematic overestimation of gene gain through false diagnosis of gene absence.

Zhaxybayeva O, Nesbø CL, Doolittle WF.

Genome Biol. 2007;8(2):402.

PMID:
17328791
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Experimental design and statistical rigor in phylogenomics of horizontal and endosymbiotic gene transfer.

Stiller JW.

BMC Evol Biol. 2011 Sep 16;11:259. doi: 10.1186/1471-2148-11-259.

PMID:
21923904
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach.

Bratke KA, McLysaght A.

BMC Evol Biol. 2008 Feb 27;8:67. doi: 10.1186/1471-2148-8-67.

PMID:
18304319
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.

Ge F, Wang LS, Kim J.

PLoS Biol. 2005 Oct;3(10):e316. Epub 2005 Aug 30.

PMID:
16122348
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phylogenetic profiles for the prediction of protein-protein interactions: how to select reference organisms?

Sun J, Li Y, Zhao Z.

Biochem Biophys Res Commun. 2007 Feb 23;353(4):985-91. Epub 2006 Dec 27.

PMID:
17207465
[PubMed - indexed for MEDLINE]
16.

Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales.

Fitzpatrick DA, Creevey CJ, McInerney JO.

Mol Biol Evol. 2006 Jan;23(1):74-85. Epub 2005 Sep 8.

PMID:
16151187
[PubMed - indexed for MEDLINE]
Free Article
17.

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.

Wu M, Scott AJ.

Bioinformatics. 2012 Apr 1;28(7):1033-4. doi: 10.1093/bioinformatics/bts079. Epub 2012 Feb 12.

PMID:
22332237
[PubMed - indexed for MEDLINE]
Free Article
18.

Phylogenetic networks: modeling, reconstructibility, and accuracy.

Moret BM, Nakhleh L, Warnow T, Linder CR, Tholse A, Padolina A, Sun J, Timme R.

IEEE/ACM Trans Comput Biol Bioinform. 2004 Jan-Mar;1(1):13-23.

PMID:
17048405
[PubMed - indexed for MEDLINE]
19.

The power of phylogenetic approaches to detect horizontally transferred genes.

Poptsova MS, Gogarten JP.

BMC Evol Biol. 2007 Mar 21;7:45.

PMID:
17376230
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A tiered approach to comparative genomics.

Ptacek T, Sell SM.

Brief Funct Genomic Proteomic. 2005 Jul;4(2):178-85. Review.

PMID:
16102272
[PubMed - indexed for MEDLINE]
Free Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk