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Results: 1 to 20 of 139

1.

Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans.

Vavouri T, Walter K, Gilks WR, Lehner B, Elgar G.

Genome Biol. 2007;8(2):R15.

PMID:
17274809
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Conserved noncoding elements and the evolution of animal body plans.

Vavouri T, Lehner B.

Bioessays. 2009 Jul;31(7):727-35. doi: 10.1002/bies.200900014. Review.

PMID:
19492354
[PubMed - indexed for MEDLINE]
3.

The importance of being cis: evolution of orthologous fish and mammalian enhancer activity.

Ritter DI, Li Q, Kostka D, Pollard KS, Guo S, Chuang JH.

Mol Biol Evol. 2010 Oct;27(10):2322-32. doi: 10.1093/molbev/msq128. Epub 2010 May 21.

PMID:
20494938
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

[Research progress of conserved non-coding elements in metazoan].

Feng J, Li G, Wang YQ.

Yi Chuan. 2013 Jan;35(1):35-44. Review. Chinese.

PMID:
23357263
[PubMed - indexed for MEDLINE]
5.

Cis-regulation and conserved non-coding elements in amphioxus.

Beaster-Jones L.

Brief Funct Genomics. 2012 Mar;11(2):118-30. doi: 10.1093/bfgp/els006. Epub 2012 Mar 7. Review.

PMID:
22402505
[PubMed - indexed for MEDLINE]
6.

Functional analysis of conserved non-coding regions around the short stature hox gene (shox) in whole zebrafish embryos.

Kenyon EJ, McEwen GK, Callaway H, Elgar G.

PLoS One. 2011;6(6):e21498. doi: 10.1371/journal.pone.0021498. Epub 2011 Jun 24.

PMID:
21731768
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Hundreds of conserved non-coding genomic regions are independently lost in mammals.

Hiller M, Schaar BT, Bejerano G.

Nucleic Acids Res. 2012 Dec;40(22):11463-76. doi: 10.1093/nar/gks905. Epub 2012 Oct 5.

PMID:
23042682
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Early evolution of conserved regulatory sequences associated with development in vertebrates.

McEwen GK, Goode DK, Parker HJ, Woolfe A, Callaway H, Elgar G.

PLoS Genet. 2009 Dec;5(12):e1000762. doi: 10.1371/journal.pgen.1000762. Epub 2009 Dec 11.

PMID:
20011110
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes.

Lee AP, Kerk SY, Tan YY, Brenner S, Venkatesh B.

Mol Biol Evol. 2011 Mar;28(3):1205-15. doi: 10.1093/molbev/msq304. Epub 2010 Nov 15.

PMID:
21081479
[PubMed - indexed for MEDLINE]
Free Article
10.

Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events.

Goode DK, Callaway HA, Cerda GA, Lewis KE, Elgar G.

Development. 2011 Mar;138(5):879-84. doi: 10.1242/dev.055996. Epub 2011 Jan 19.

PMID:
21247963
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes.

Punnamoottil B, Herrmann C, Pascual-Anaya J, D'Aniello S, Garcia-Fernàndez J, Akalin A, Becker TS, Rinkwitz S.

Dev Biol. 2010 Apr 15;340(2):269-82. doi: 10.1016/j.ydbio.2010.01.035. Epub 2010 Feb 6.

PMID:
20144609
[PubMed - indexed for MEDLINE]
Free Article
12.

Parallel evolution of chordate cis-regulatory code for development.

Doglio L, Goode DK, Pelleri MC, Pauls S, Frabetti F, Shimeld SM, Vavouri T, Elgar G.

PLoS Genet. 2013 Nov;9(11):e1003904. doi: 10.1371/journal.pgen.1003904. Epub 2013 Nov 21. Erratum in: PLoS Genet. 2013 Nov;9(11). doi:10.1371/annotation/1fc82a4b-f9ea-461a-8987-1152078688e4.

PMID:
24282393
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers.

Abbasi AA, Paparidis Z, Malik S, Goode DK, Callaway H, Elgar G, Grzeschik KH.

PLoS One. 2007 Apr 11;2(4):e366.

PMID:
17426814
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D.

Genome Res. 2005 Aug;15(8):1034-50. Epub 2005 Jul 15.

PMID:
16024819
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Highly conserved non-coding sequences are associated with vertebrate development.

Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJ, Cooke JE, Elgar G.

PLoS Biol. 2005 Jan;3(1):e7. Epub 2004 Nov 11.

PMID:
15630479
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Positive and negative selection in murine ultraconserved noncoding elements.

Halligan DL, Oliver F, Guthrie J, Stemshorn KC, Harr B, Keightley PD.

Mol Biol Evol. 2011 Sep;28(9):2651-60. doi: 10.1093/molbev/msr093. Epub 2011 Apr 8.

PMID:
21478460
[PubMed - indexed for MEDLINE]
Free Article
17.

Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers.

Parveen N, Masood A, Iftikhar N, Minhas BF, Minhas R, Nawaz U, Abbasi AA.

BMC Genomics. 2013 Feb 23;14:122. doi: 10.1186/1471-2164-14-122.

PMID:
23432897
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Pan-vertebrate conserved non-coding sequences associated with developmental regulation.

Elgar G.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):256-65. doi: 10.1093/bfgp/elp033. Review.

PMID:
19752044
[PubMed - indexed for MEDLINE]
Free Article
19.

A reporter assay in lamprey embryos reveals both functional conservation and elaboration of vertebrate enhancers.

Parker HJ, Sauka-Spengler T, Bronner M, Elgar G.

PLoS One. 2014 Jan 9;9(1):e85492. doi: 10.1371/journal.pone.0085492. eCollection 2014.

PMID:
24416417
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons.

Wang QF, Prabhakar S, Chanan S, Cheng JF, Rubin EM, Boffelli D.

Genome Biol. 2007;8(1):R1.

PMID:
17201929
[PubMed - indexed for MEDLINE]
Free PMC Article

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