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Results: 1 to 20 of 84

1.

Evolutionary conservation of domain-domain interactions.

Itzhaki Z, Akiva E, Altuvia Y, Margalit H.

Genome Biol. 2006;7(12):R125.

PMID:
17184549
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evolution of multicellularity in Metazoa: comparative analysis of the subcellular localization of proteins in Saccharomyces, Drosophila and Caenorhabditis.

Hazkani-Covo E, Levanon EY, Rotman G, Graur D, Novik A.

Cell Biol Int. 2004;28(3):171-8.

PMID:
14984742
[PubMed - indexed for MEDLINE]
3.

Pairwise alignment of protein interaction networks.

Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A.

J Comput Biol. 2006 Mar;13(2):182-99.

PMID:
16597234
[PubMed - indexed for MEDLINE]
4.

Scale-free behavior in protein domain networks.

Wuchty S.

Mol Biol Evol. 2001 Sep;18(9):1694-702.

PMID:
11504849
[PubMed - indexed for MEDLINE]
Free Article
5.

Protein-protein interactions more conserved within species than across species.

Mika S, Rost B.

PLoS Comput Biol. 2006 Jul 21;2(7):e79. Epub 2006 May 18.

PMID:
16854211
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.

Li D, Li J, Ouyang S, Wang J, Wu S, Wan P, Zhu Y, Xu X, He F.

Proteomics. 2006 Jan;6(2):456-61.

PMID:
16317777
[PubMed - indexed for MEDLINE]
7.

Evaluation of different domain-based methods in protein interaction prediction.

Ta HX, Holm L.

Biochem Biophys Res Commun. 2009 Dec 18;390(3):357-62. doi: 10.1016/j.bbrc.2009.09.130. Epub 2009 Oct 2. Review.

PMID:
19800868
[PubMed - indexed for MEDLINE]
8.

Evidence of probabilistic behaviour in protein interaction networks.

Ivanic J, Wallqvist A, Reifman J.

BMC Syst Biol. 2008 Jan 31;2:11. doi: 10.1186/1752-0509-2-11.

PMID:
18237403
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Reconstituting protein interaction networks using parameter-dependent domain-domain interactions.

Memišević V, Wallqvist A, Reifman J.

BMC Bioinformatics. 2013 May 7;14:154. doi: 10.1186/1471-2105-14-154.

PMID:
23651452
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Inferring homologous protein-protein interactions through pair position specific scoring matrix.

Lin CY, Chen YC, Lo YS, Yang JM.

BMC Bioinformatics. 2013;14 Suppl 2:S11. doi: 10.1186/1471-2105-14-S2-S11. Epub 2013 Jan 21.

PMID:
23367879
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A general tendency for conservation of protein length across eukaryotic kingdoms.

Wang D, Hsieh M, Li WH.

Mol Biol Evol. 2005 Jan;22(1):142-7. Epub 2004 Sep 15.

PMID:
15371528
[PubMed - indexed for MEDLINE]
Free Article
12.

Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity.

Vavouri T, Semple JI, Garcia-Verdugo R, Lehner B.

Cell. 2009 Jul 10;138(1):198-208. doi: 10.1016/j.cell.2009.04.029.

PMID:
19596244
[PubMed - indexed for MEDLINE]
Free Article
13.

Evolutionary plasticity of genetic interaction networks.

Tischler J, Lehner B, Fraser AG.

Nat Genet. 2008 Apr;40(4):390-1. doi: 10.1038/ng.114. Epub 2008 Mar 23.

PMID:
18362882
[PubMed - indexed for MEDLINE]
14.

A methodology for detecting the orthology signal in a PPI network at a functional complex level.

Jancura P, Mavridou E, Carrillo-de Santa Pau E, Marchiori E.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S18. doi: 10.1186/1471-2105-13-S10-S18.

PMID:
22759423
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A truer measure of our ignorance.

Amaral LA.

Proc Natl Acad Sci U S A. 2008 May 13;105(19):6795-6. doi: 10.1073/pnas.0802459105. Epub 2008 May 12. No abstract available.

PMID:
18474865
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Regulatory evolution across the protein interaction network.

Lemos B, Meiklejohn CD, Hartl DL.

Nat Genet. 2004 Oct;36(10):1059-60. Epub 2004 Sep 19.

PMID:
15378060
[PubMed - indexed for MEDLINE]
17.

Estimating the size of the human interactome.

Stumpf MP, Thorne T, de Silva E, Stewart R, An HJ, Lappe M, Wiuf C.

Proc Natl Acad Sci U S A. 2008 May 13;105(19):6959-64. doi: 10.1073/pnas.0708078105. Epub 2008 May 12.

PMID:
18474861
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Differential evolutionary rates of duplicated genes in protein interaction network.

Makino T, Suzuki Y, Gojobori T.

Gene. 2006 Dec 30;385:57-63. Epub 2006 Aug 17.

PMID:
16979849
[PubMed - indexed for MEDLINE]
19.

Disorder and sequence repeats in hub proteins and their implications for network evolution.

Dosztányi Z, Chen J, Dunker AK, Simon I, Tompa P.

J Proteome Res. 2006 Nov;5(11):2985-95.

PMID:
17081050
[PubMed - indexed for MEDLINE]
20.

A top-down approach to infer and compare domain-domain interactions across eight model organisms.

Guda C, King BR, Pal LR, Guda P.

PLoS One. 2009;4(3):e5096. doi: 10.1371/journal.pone.0005096. Epub 2009 Mar 31.

PMID:
19333396
[PubMed - indexed for MEDLINE]
Free PMC Article

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