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Results: 1 to 20 of 88

1.

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics.

Keränen SV, Fowlkes CC, Luengo Hendriks CL, Sudar D, Knowles DW, Malik J, Biggin MD.

Genome Biol. 2006;7(12):R124.

PMID:
17184547
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.

Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW.

Genome Biol. 2006;7(12):R123.

PMID:
17184546
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Three-dimensional morphology and gene expression mapping for the Drosophila blastoderm.

Knowles DW.

Cold Spring Harb Protoc. 2012 Feb 1;2012(2):150-61. doi: 10.1101/pdb.top067843.

PMID:
22301653
[PubMed - indexed for MEDLINE]
4.

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J.

Cell. 2008 Apr 18;133(2):364-74. doi: 10.1016/j.cell.2008.01.053.

PMID:
18423206
[PubMed - indexed for MEDLINE]
Free Article
5.

A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.

Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH.

PLoS Genet. 2011 Oct;7(10):e1002346. doi: 10.1371/journal.pgen.1002346. Epub 2011 Oct 27.

PMID:
22046143
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Building quantitative, three-dimensional atlases of gene expression and morphology at cellular resolution.

Knowles DW, Biggin MD.

Wiley Interdiscip Rev Dev Biol. 2013 Nov-Dec;2(6):767-79. doi: 10.1002/wdev.107. Epub 2013 Feb 4. Review.

PMID:
24123936
[PubMed - indexed for MEDLINE]
7.

fushi tarazu protein expression in the cellular blastoderm of Drosophila detected using a novel imaging technique.

Karr TL, Kornberg TB.

Development. 1989 May;106(1):95-103.

PMID:
2697548
[PubMed - indexed for MEDLINE]
Free Article
8.

Drosophila blastoderm patterning.

Jaeger J, Manu, Reinitz J.

Curr Opin Genet Dev. 2012 Dec;22(6):533-41. doi: 10.1016/j.gde.2012.10.005. Epub 2013 Jan 4. Review.

PMID:
23290311
[PubMed - indexed for MEDLINE]
Free Article
9.

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data.

Aswani A, Keränen SV, Brown J, Fowlkes CC, Knowles DW, Biggin MD, Bickel P, Tomlin CJ.

BMC Bioinformatics. 2010 Aug 4;11:413. doi: 10.1186/1471-2105-11-413.

PMID:
20684787
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Cytoarchitecture and the patterning of fushi tarazu expression in the Drosophila blastoderm.

Edgar BA, Odell GM, Schubiger G.

Genes Dev. 1987 Dec;1(10):1226-37.

PMID:
3123317
[PubMed - indexed for MEDLINE]
Free Article
11.

Cell cycle control by the nucleo-cytoplasmic ratio in early Drosophila development.

Edgar BA, Kiehle CP, Schubiger G.

Cell. 1986 Jan 31;44(2):365-72.

PMID:
3080248
[PubMed - indexed for MEDLINE]
12.

Decapentaplegic transcripts are localized along the dorsal-ventral axis of the Drosophila embryo.

St Johnston RD, Gelbart WM.

EMBO J. 1987 Sep;6(9):2785-91.

PMID:
3119329
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Changes in the pattern of twisted gastrulation gene expression among Drosophila species.

Mason ED, Marsh JL.

J Mol Evol. 1998 Feb;46(2):180-7.

PMID:
9452520
[PubMed - indexed for MEDLINE]
14.

Blastoderm-differential and blastoderm-specific genes of Drosophila melanogaster.

Roark M, Mahoney PA, Graham ML, Lengyel JA.

Dev Biol. 1985 Jun;109(2):476-88.

PMID:
2581833
[PubMed - indexed for MEDLINE]
15.

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.

Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD.

PLoS Biol. 2008 Feb;6(2):e27. doi: 10.1371/journal.pbio.0060027.

PMID:
18271625
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Non-periodic cues generate seven ftz stripes in the Drosophila embryo.

Yu Y, Pick L.

Mech Dev. 1995 Apr;50(2-3):163-75.

PMID:
7619728
[PubMed - indexed for MEDLINE]
17.

The spatial distribution of a blastoderm stage-specific mRNA from the serendipity locus of Drosophila melanogaster.

James AA, Vincent A.

Dev Biol. 1986 Dec;118(2):474-9.

PMID:
3098598
[PubMed - indexed for MEDLINE]
18.

Identification of genes expressed during Drosophila melanogaster gastrulation by using subtractive hybridization.

González-Agüero M, Zúñiga A, Pottstock H, Del Pozo T, González M, Cambiazo V.

Gene. 2005 Jan 31;345(2):213-24. Epub 2005 Jan 1.

PMID:
15716118
[PubMed - indexed for MEDLINE]
19.

A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata.

García-Solache M, Jaeger J, Akam M.

Dev Biol. 2010 Aug 1;344(1):306-18. doi: 10.1016/j.ydbio.2010.04.019. Epub 2010 Apr 28.

PMID:
20433825
[PubMed - indexed for MEDLINE]
Free Article
20.

Regulatory and coding regions of the segmentation gene hunchback are functionally conserved between Drosophila virilis and Drosophila melanogaster.

Lukowitz W, Schröder C, Glaser G, Hülskamp M, Tautz D.

Mech Dev. 1994 Feb;45(2):105-15.

PMID:
8199047
[PubMed - indexed for MEDLINE]

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