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Results: 1 to 20 of 97

1.

Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns.

Sironi M, Menozzi G, Comi GP, Cereda M, Cagliani R, Bresolin N, Pozzoli U.

Genome Biol. 2006;7(12):R120.

PMID:
17181857
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences.

Sironi M, Menozzi G, Comi GP, Cagliani R, Bresolin N, Pozzoli U.

Hum Mol Genet. 2005 Sep 1;14(17):2533-46. Epub 2005 Jul 21.

PMID:
16037065
[PubMed - indexed for MEDLINE]
Free Article
3.

Distributions of transposable elements reveal hazardous zones in mammalian introns.

Zhang Y, Romanish MT, Mager DL.

PLoS Comput Biol. 2011 May;7(5):e1002046. doi: 10.1371/journal.pcbi.1002046. Epub 2011 May 5.

PMID:
21573203
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics.

Sironi M, Menozzi G, Comi GP, Bresolin N, Cagliani R, Pozzoli U.

Trends Genet. 2005 Sep;21(9):484-8.

PMID:
16005101
[PubMed - indexed for MEDLINE]
5.

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.

BMC Genomics. 2008 May 17;9:226. doi: 10.1186/1471-2164-9-226.

PMID:
18485226
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in Mammalian intron size expansion.

Wang D, Su Y, Wang X, Lei H, Yu J.

Evol Bioinform Online. 2012;8:301-19. doi: 10.4137/EBO.S9758. Epub 2012 Jun 19.

PMID:
22807622
[PubMed]
Free PMC Article
7.

Gene properties and chromatin state influence the accumulation of transposable elements in genes.

Zhang Y, Mager DL.

PLoS One. 2012;7(1):e30158. doi: 10.1371/journal.pone.0030158. Epub 2012 Jan 17.

PMID:
22272293
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

Sela N, Mersch B, Gal-Mark N, Lev-Maor G, Hotz-Wagenblatt A, Ast G.

Genome Biol. 2007;8(6):R127.

PMID:
17594509
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Analysis of transposon interruptions suggests selection for L1 elements on the X chromosome.

Abrusán G, Giordano J, Warburton PE.

PLoS Genet. 2008 Aug 29;4(8):e1000172. doi: 10.1371/journal.pgen.1000172.

PMID:
18769724
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates.

Sela N, Kim E, Ast G.

Genome Biol. 2010;11(6):R59. doi: 10.1186/gb-2010-11-6-r59. Epub 2010 Jun 2.

PMID:
20525173
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transposable elements in disease-associated cryptic exons.

Vorechovsky I.

Hum Genet. 2010 Feb;127(2):135-54. doi: 10.1007/s00439-009-0752-4. Epub 2009 Oct 10.

PMID:
19823873
[PubMed - indexed for MEDLINE]
12.

The contribution of transposable elements to Bos taurus gene structure.

Almeida LM, Silva IT, Silva WA Jr, Castro JP, Riggs PK, Carareto CM, Amaral ME.

Gene. 2007 Apr 1;390(1-2):180-9. Epub 2006 Oct 28.

PMID:
17157447
[PubMed - indexed for MEDLINE]
13.

Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.

Lipatov M, Lenkov K, Petrov DA, Bergman CM.

BMC Biol. 2005 Nov 12;3:24.

PMID:
16283942
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin.

Fontanillas P, Hartl DL, Reuter M.

PLoS Genet. 2007 Nov;3(11):e210. Epub 2007 Oct 10.

PMID:
18081425
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Rice transposable elements are characterized by various methylation environments in the genome.

Takata M, Kiyohara A, Takasu A, Kishima Y, Ohtsubo H, Sano Y.

BMC Genomics. 2007 Dec 20;8:469.

PMID:
18093338
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.

Levy A, Sela N, Ast G.

Nucleic Acids Res. 2008 Jan;36(Database issue):D47-52. Epub 2007 Nov 5.

PMID:
17986453
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data.

Zhang W, Edwards A, Fan W, Fang Z, Deininger P, Zhang K.

BMC Genomics. 2013 Aug 28;14:584. doi: 10.1186/1471-2164-14-584.

PMID:
23984937
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species.

Mortada H, Vieira C, Lerat E.

J Mol Evol. 2010 Sep;71(3):180-91. doi: 10.1007/s00239-010-9376-5. Epub 2010 Aug 27.

PMID:
20798934
[PubMed - indexed for MEDLINE]
19.

Characterization and functional annotation of nested transposable elements in eukaryotic genomes.

Gao C, Xiao M, Ren X, Hayward A, Yin J, Wu L, Fu D, Li J.

Genomics. 2012 Oct;100(4):222-30. doi: 10.1016/j.ygeno.2012.07.004. Epub 2012 Jul 16.

PMID:
22800764
[PubMed - indexed for MEDLINE]
Free Article
20.

Cell type-specific termination of transcription by transposable element sequences.

Conley AB, Jordan IK.

Mob DNA. 2012 Sep 30;3(1):15. doi: 10.1186/1759-8753-3-15.

PMID:
23020800
[PubMed]
Free PMC Article

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