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Results: 1 to 20 of 73

1.

Dynamic usage of transcription start sites within core promoters.

Kawaji H, Frith MC, Katayama S, Sandelin A, Kai C, Kawai J, Carninci P, Hayashizaki Y.

Genome Biol. 2006;7(12):R118.

PMID:
17156492
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Diversity of core promoter elements comprising human bidirectional promoters.

Yang MQ, Elnitski LL.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S3. doi: 10.1186/1471-2164-9-S2-S3.

PMID:
18831794
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Expression of the CTCF-paralogous cancer-testis gene, brother of the regulator of imprinted sites (BORIS), is regulated by three alternative promoters modulated by CpG methylation and by CTCF and p53 transcription factors.

Renaud S, Pugacheva EM, Delgado MD, Braunschweig R, Abdullaev Z, Loukinov D, Benhattar J, Lobanenkov V.

Nucleic Acids Res. 2007;35(21):7372-88. Epub 2007 Oct 25.

PMID:
17962299
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

ATG deserts define a novel core promoter subclass.

Lee MP, Howcroft K, Kotekar A, Yang HH, Buetow KH, Singer DS.

Genome Res. 2005 Sep;15(9):1189-97. Epub 2005 Aug 18.

PMID:
16109972
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

V1R promoters are well conserved and exhibit common putative regulatory motifs.

Stewart R, Lane RP.

BMC Genomics. 2007 Jul 25;8:253.

PMID:
17651493
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Diverse DNA methylation statuses at alternative promoters of human genes in various tissues.

Cheong J, Yamada Y, Yamashita R, Irie T, Kanai A, Wakaguri H, Nakai K, Ito T, Saito I, Sugano S, Suzuki Y.

DNA Res. 2006 Aug 31;13(4):155-67. Epub 2006 Oct 26.

PMID:
17068070
[PubMed - indexed for MEDLINE]
Free Article
7.

A human B cell methylome at 100-base pair resolution.

Rauch TA, Wu X, Zhong X, Riggs AD, Pfeifer GP.

Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):671-8. doi: 10.1073/pnas.0812399106. Epub 2009 Jan 12.

PMID:
19139413
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Undifferentiated hematopoietic cells are characterized by a genome-wide undermethylation dip around the transcription start site and a hierarchical epigenetic plasticity.

Chung YS, Kim HJ, Kim TM, Hong SH, Kwon KR, An S, Park JH, Lee S, Oh IH.

Blood. 2009 Dec 3;114(24):4968-78. doi: 10.1182/blood-2009-01-197780. Epub 2009 Sep 14.

PMID:
19752395
[PubMed - indexed for MEDLINE]
Free Article
9.

Structure, function and evolution of CpG island promoters.

Antequera F.

Cell Mol Life Sci. 2003 Aug;60(8):1647-58. Review.

PMID:
14504655
[PubMed - indexed for MEDLINE]
10.

Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements.

Anish R, Hossain MB, Jacobson RH, Takada S.

PLoS One. 2009;4(4):e5103. doi: 10.1371/journal.pone.0005103. Epub 2009 Apr 1.

PMID:
19337366
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Highly individual methylation patterns of alternative glucocorticoid receptor promoters suggest individualized epigenetic regulatory mechanisms.

Turner JD, Pelascini LP, Macedo JA, Muller CP.

Nucleic Acids Res. 2008 Dec;36(22):7207-18. doi: 10.1093/nar/gkn897. Epub 2008 Nov 12.

PMID:
19004867
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transient cyclical methylation of promoter DNA.

Kangaspeska S, Stride B, M├ętivier R, Polycarpou-Schwarz M, Ibberson D, Carmouche RP, Benes V, Gannon F, Reid G.

Nature. 2008 Mar 6;452(7183):112-5. doi: 10.1038/nature06640.

PMID:
18322535
[PubMed - indexed for MEDLINE]
13.

Transcriptional features of genomic regulatory blocks.

Akalin A, Fredman D, Arner E, Dong X, Bryne JC, Suzuki H, Daub CO, Hayashizaki Y, Lenhard B.

Genome Biol. 2009;10(4):R38. doi: 10.1186/gb-2009-10-4-r38. Epub 2009 Apr 19.

PMID:
19374772
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Relationship between DNA methylation states and transcription of individual isoforms encoded by the protocadherin-alpha gene cluster.

Kawaguchi M, Toyama T, Kaneko R, Hirayama T, Kawamura Y, Yagi T.

J Biol Chem. 2008 May 2;283(18):12064-75. doi: 10.1074/jbc.M709648200. Epub 2008 Jan 18.

PMID:
18204046
[PubMed - indexed for MEDLINE]
Free Article
15.

Nucleosomes at active promoters: unforgettable loss.

Henikoff S.

Cancer Cell. 2007 Nov;12(5):407-9.

PMID:
17996642
[PubMed - indexed for MEDLINE]
Free Article
16.

The biology of eukaryotic promoter prediction--a review.

Pedersen AG, Baldi P, Chauvin Y, Brunak S.

Comput Chem. 1999 Jun 15;23(3-4):191-207. Review.

PMID:
10404615
[PubMed - indexed for MEDLINE]
17.

Comparative analysis of the mammalian WNT4 promoter.

Yu H, Pask AJ, Shaw G, Renfree MB.

BMC Genomics. 2009 Sep 6;10:416. doi: 10.1186/1471-2164-10-416.

PMID:
19732466
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Predicting polymerase II core promoters by cooperating transcription factor binding sites in eukaryotic genes.

Ma XT, Qian MP, Tang HX.

Acta Biochim Biophys Sin (Shanghai). 2004 Apr;36(4):250-8.

PMID:
15253150
[PubMed - indexed for MEDLINE]
19.

Mammalian RNA polymerase II core promoters: insights from genome-wide studies.

Sandelin A, Carninci P, Lenhard B, Ponjavic J, Hayashizaki Y, Hume DA.

Nat Rev Genet. 2007 Jun;8(6):424-36. Epub 2007 May 8. Review.

PMID:
17486122
[PubMed - indexed for MEDLINE]
20.

Characterization of the human SLC22A18 gene promoter and its regulation by the transcription factor Sp1.

Ali AM, Bajaj V, Gopinath KS, Kumar A.

Gene. 2009 Jan 15;429(1-2):37-43. doi: 10.1016/j.gene.2008.10.004. Epub 2008 Oct 22.

PMID:
18996451
[PubMed - indexed for MEDLINE]

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