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Results: 1 to 20 of 338

1.

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.

King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R.

Genome Biol. 2006;7(11):R106.

PMID:
17101051
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Proteome survey reveals modularity of the yeast cell machinery.

Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.

PMID:
16429126
[PubMed - indexed for MEDLINE]
3.

The PeptideAtlas project.

Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, Eng J, Chen S, Eddes J, Loevenich SN, Aebersold R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D655-8.

PMID:
16381952
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Playing tag with the yeast proteome.

Andrews BJ, Bader GD, Boone C.

Nat Biotechnol. 2003 Nov;21(11):1297-9. No abstract available.

PMID:
14595360
[PubMed - indexed for MEDLINE]
5.

Functional profiling of the Saccharomyces cerevisiae genome.

Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Güldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kötter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, Schimmack G, Shafer B, Shoemaker DD, Sookhai-Mahadeo S, Storms RK, Strathern JN, Valle G, Voet M, Volckaert G, Wang CY, Ward TR, Wilhelmy J, Winzeler EA, Yang Y, Yen G, Youngman E, Yu K, Bussey H, Boeke JD, Snyder M, Philippsen P, Davis RW, Johnston M.

Nature. 2002 Jul 25;418(6896):387-91.

PMID:
12140549
[PubMed - indexed for MEDLINE]
6.

Proteomics: where's Waldo in yeast?

Wohlschlegel JA, Yates JR.

Nature. 2003 Oct 16;425(6959):671-2. No abstract available.

PMID:
14562083
[PubMed - indexed for MEDLINE]
7.

Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.

Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D442-5.

PMID:
16381907
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Global analysis of protein expression in yeast.

Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, Dephoure N, O'Shea EK, Weissman JS.

Nature. 2003 Oct 16;425(6959):737-41.

PMID:
14562106
[PubMed - indexed for MEDLINE]
Free Article
9.

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.

Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE; FlyBase Consortium, Aebersold R, Hafen E.

BMC Bioinformatics. 2009 Feb 11;10:59. doi: 10.1186/1471-2105-10-59.

PMID:
19210778
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Parallel identification of new genes in Saccharomyces cerevisiae.

Oshiro G, Wodicka LM, Washburn MP, Yates JR 3rd, Lockhart DJ, Winzeler EA.

Genome Res. 2002 Aug;12(8):1210-20.

PMID:
12176929
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Expanded protein information at SGD: new pages and proteome browser.

Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2007 Jan;35(Database issue):D468-71. Epub 2006 Nov 16.

PMID:
17142221
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae.

Joshi T, Chen Y, Becker JM, Alexandrov N, Xu D.

OMICS. 2004 Winter;8(4):322-33.

PMID:
15703479
[PubMed - indexed for MEDLINE]
13.

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF.

Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.

PMID:
16554755
[PubMed - indexed for MEDLINE]
14.

Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae?

Raiford DW, Heizer EM Jr, Miller RV, Akashi H, Raymer ML, Krane DE.

J Mol Evol. 2008 Dec;67(6):621-30. doi: 10.1007/s00239-008-9162-9.

PMID:
18937004
[PubMed - indexed for MEDLINE]
15.

Quantitative proteomics targeting classes of motif-containing peptides using immunoaffinity-based mass spectrometry.

Olsson N, James P, Borrebaeck CA, Wingren C.

Mol Cell Proteomics. 2012 Aug;11(8):342-54. doi: 10.1074/mcp.M111.016238. Epub 2012 Apr 27.

PMID:
22543061
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.

Weng S, Dong Q, Balakrishnan R, Christie K, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hong E, Issel-Tarver L, Sethuraman A, Theesfeld C, Andrada R, Binkley G, Lane C, Schroeder M, Botstein D, Michael Cherry J.

Nucleic Acids Res. 2003 Jan 1;31(1):216-8.

PMID:
12519985
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M.

Nature. 2008 Oct 30;455(7217):1251-4. doi: 10.1038/nature07341. Epub 2008 Sep 28.

PMID:
18820680
[PubMed - indexed for MEDLINE]
18.

Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).

Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D374-7.

PMID:
15608219
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Re-annotation of protein-coding genes in the genome of saccharomyces cerevisiae based on support vector machines.

Lin D, Yin X, Wang X, Zhou P, Guo FB.

PLoS One. 2013 Jul 10;8(7):e64477. doi: 10.1371/journal.pone.0064477. Print 2013.

PMID:
23874379
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution.

Harrison P, Kumar A, Lan N, Echols N, Snyder M, Gerstein M.

J Mol Biol. 2002 Feb 22;316(3):409-19.

PMID:
11866506
[PubMed - indexed for MEDLINE]

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