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Results: 1 to 20 of 72

1.

Predicting domain-domain interactions using a parsimony approach.

Guimarães KS, Jothi R, Zotenko E, Przytycka TM.

Genome Biol. 2006;7(11):R104.

PMID:
17094802
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Interrogating domain-domain interactions with parsimony based approaches.

Guimarães KS, Przytycka TM.

BMC Bioinformatics. 2008 Mar 26;9:171. doi: 10.1186/1471-2105-9-171.

PMID:
18366803
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Inferring protein domain interactions from databases of interacting proteins.

Riley R, Lee C, Sabatti C, Eisenberg D.

Genome Biol. 2005;6(10):R89. Epub 2005 Sep 19.

PMID:
16207360
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis on multi-domain cooperation for predicting protein-protein interactions.

Wang RS, Wang Y, Wu LY, Zhang XS, Chen L.

BMC Bioinformatics. 2007 Oct 16;8:391.

PMID:
17937822
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Toward predicting protein topology: an approach to identifying beta hairpins.

de la Cruz X, Hutchinson EG, Shepherd A, Thornton JM.

Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11157-62. Epub 2002 Aug 12.

PMID:
12177429
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A global optimization strategy for predicting alpha-helical protein tertiary structure.

Crivelli S, Byrd R, Eskow E, Schnabe R, Yu R, Philip TM, Head-Gordon T.

Comput Chem. 2000 May;24(3-4):489-97.

PMID:
10816018
[PubMed - indexed for MEDLINE]
7.

Predicting protein domain interactions from coevolution of conserved regions.

Kann MG, Jothi R, Cherukuri PF, Przytycka TM.

Proteins. 2007 Jun 1;67(4):811-20.

PMID:
17357158
[PubMed - indexed for MEDLINE]
8.

Predicting gene ontology functions from protein's regional surface structures.

Liu ZP, Wu LY, Wang Y, Chen L, Zhang XS.

BMC Bioinformatics. 2007 Dec 11;8:475.

PMID:
18070366
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A domain interaction map based on phylogenetic profiling.

Pagel P, Wong P, Frishman D.

J Mol Biol. 2004 Dec 10;344(5):1331-46.

PMID:
15561146
[PubMed - indexed for MEDLINE]
10.

Bayesian methods for predicting interacting protein pairs using domain information.

Kim I, Liu Y, Zhao H.

Biometrics. 2007 Sep;63(3):824-33.

PMID:
17825014
[PubMed - indexed for MEDLINE]
11.

DAPID: a 3D-domain annotated protein-protein interaction database.

Chen YC, Chen HC, Yang JM.

Genome Inform. 2006;17(2):206-15.

PMID:
17503393
[PubMed - indexed for MEDLINE]
12.

Predicting protein-protein interactions from protein domains using a set cover approach.

Huang C, Morcos F, Kanaan SP, Wuchty S, Chen DZ, Izaguirre JA.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):78-87.

PMID:
17277415
[PubMed - indexed for MEDLINE]
13.

Protein complex prediction based on mutually exclusive interactions in protein interaction network.

Jung SH, Jang WH, Hur HY, Hyun B, Han DS.

Genome Inform. 2008;21:77-88.

PMID:
19425149
[PubMed - indexed for MEDLINE]
Free Article
14.

Protein domain annotation with integration of heterogeneous information sources.

Zhao XM, Wang Y, Chen L, Aihara K.

Proteins. 2008 Jul;72(1):461-73. doi: 10.1002/prot.21943.

PMID:
18214951
[PubMed - indexed for MEDLINE]
15.

A genome-wide Ras-effector interaction network.

Kiel C, Foglierini M, Kuemmerer N, Beltrao P, Serrano L.

J Mol Biol. 2007 Jul 27;370(5):1020-32. Epub 2007 May 22.

PMID:
17544445
[PubMed - indexed for MEDLINE]
16.

Functional evaluation of domain-domain interactions and human protein interaction networks.

Schlicker A, Huthmacher C, Ramírez F, Lengauer T, Albrecht M.

Bioinformatics. 2007 Apr 1;23(7):859-65.

PMID:
17456608
[PubMed - indexed for MEDLINE]
Free Article
17.

Protein domain prediction.

Ingolfsson H, Yona G.

Methods Mol Biol. 2008;426:117-43. doi: 10.1007/978-1-60327-058-8_7.

PMID:
18542860
[PubMed - indexed for MEDLINE]
18.

Structural assembly of two-domain proteins by rigid-body docking.

Cheng TM, Blundell TL, Fernandez-Recio J.

BMC Bioinformatics. 2008 Oct 16;9:441. doi: 10.1186/1471-2105-9-441.

PMID:
18925951
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Prediction of Ras-effector interactions using position energy matrices.

Kiel C, Serrano L.

Bioinformatics. 2007 Sep 1;23(17):2226-30. Epub 2007 Jun 28.

PMID:
17599936
[PubMed - indexed for MEDLINE]
Free Article
20.

The evolution of protein functions and networks: a family-centric approach.

Dessailly BH, Reid AJ, Yeats C, Lees JG, Cuff A, Orengo CA.

Biochem Soc Trans. 2009 Aug;37(Pt 4):745-50. doi: 10.1042/BST0370745.

PMID:
19614587
[PubMed - indexed for MEDLINE]

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