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Results: 1 to 20 of 96

1.

CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, Golland P, Sabatini DM.

Genome Biol. 2006;7(10):R100. Epub 2006 Oct 31.

PMID:
17076895
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

CellProfiler: free, versatile software for automated biological image analysis.

Lamprecht MR, Sabatini DM, Carpenter AE.

Biotechniques. 2007 Jan;42(1):71-5.

PMID:
17269487
[PubMed - indexed for MEDLINE]
Free Article
3.

CellProfiler Analyst: data exploration and analysis software for complex image-based screens.

Jones TR, Kang IH, Wheeler DB, Lindquist RA, Papallo A, Sabatini DM, Golland P, Carpenter AE.

BMC Bioinformatics. 2008 Nov 15;9:482. doi: 10.1186/1471-2105-9-482.

PMID:
19014601
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Kamentsky L, Jones TR, Fraser A, Bray MA, Logan DJ, Madden KL, Ljosa V, Rueden C, Eliceiri KW, Carpenter AE.

Bioinformatics. 2011 Apr 15;27(8):1179-80. doi: 10.1093/bioinformatics/btr095. Epub 2011 Feb 23.

PMID:
21349861
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.

Yin Z, Zhou X, Bakal C, Li F, Sun Y, Perrimon N, Wong ST.

BMC Bioinformatics. 2008 Jun 5;9:264. doi: 10.1186/1471-2105-9-264.

PMID:
18534020
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

An image analysis toolbox for high-throughput C. elegans assays.

Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE.

Nat Methods. 2012 Apr 22;9(7):714-6. doi: 10.1038/nmeth.1984.

PMID:
22522656
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Automatic analysis of silver-stained comets by CellProfiler software.

González JE, Romero I, Barquinero JF, García O.

Mutat Res. 2012 Oct 9;748(1-2):60-4. doi: 10.1016/j.mrgentox.2012.06.007. Epub 2012 Jul 5.

PMID:
22771502
[PubMed - indexed for MEDLINE]
8.

Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images.

Selinummi J, Ruusuvuori P, Podolsky I, Ozinsky A, Gold E, Yli-Harja O, Aderem A, Shmulevich I.

PLoS One. 2009 Oct 22;4(10):e7497. doi: 10.1371/journal.pone.0007497.

PMID:
19847301
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling.

Wang J, Zhou X, Li F, Bradley PL, Chang SF, Perrimon N, Wong ST.

J Biomed Inform. 2009 Feb;42(1):32-40. doi: 10.1016/j.jbi.2008.04.007. Epub 2008 Apr 29.

PMID:
18547870
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

CellProfiler and KNIME: open source tools for high content screening.

Stöter M, Niederlein A, Barsacchi R, Meyenhofer F, Brandl H, Bickle M.

Methods Mol Biol. 2013;986:105-22. doi: 10.1007/978-1-62703-311-4_8.

PMID:
23436409
[PubMed - indexed for MEDLINE]
11.

Enhanced CellClassifier: a multi-class classification tool for microscopy images.

Misselwitz B, Strittmatter G, Periaswamy B, Schlumberger MC, Rout S, Horvath P, Kozak K, Hardt WD.

BMC Bioinformatics. 2010 Jan 14;11:30. doi: 10.1186/1471-2105-11-30.

PMID:
20074370
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Extracting rich information from images.

Carpenter AE.

Methods Mol Biol. 2009;486:193-211. doi: 10.1007/978-1-60327-545-3_14.

PMID:
19347625
[PubMed - indexed for MEDLINE]
13.

Cellular analysis by open-source software for affordable cytometry.

Mittag A, Pinto FE, Endringer DC, Tarnok A, Lenz D.

Scanning. 2011 Jan-Feb;33(1):33-40. doi: 10.1002/sca.20220. Epub 2011 Feb 11.

PMID:
21319173
[PubMed - indexed for MEDLINE]
14.

Tracking movement behavior of multiple worms on food.

Yemini E, Kerr RA, Schafer WR.

Cold Spring Harb Protoc. 2011 Dec 1;2011(12):1483-7. doi: 10.1101/pdb.prot067025.

PMID:
22135669
[PubMed - indexed for MEDLINE]
15.

Automated quantitative live cell fluorescence microscopy.

Fero M, Pogliano K.

Cold Spring Harb Perspect Biol. 2010 Aug;2(8):a000455. doi: 10.1101/cshperspect.a000455. Epub 2010 Jun 30. Review.

PMID:
20591990
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Quantitative image analysis of gamma-H2AX foci induced by ionizing radiation applying open source programs.

González JE, Lee M, Barquinero JF, Valente M, Roch-Lefèvre S, García O.

Anal Quant Cytol Histol. 2012 Apr;34(2):66-71.

PMID:
22611761
[PubMed - indexed for MEDLINE]
17.

Towards automated cellular image segmentation for RNAi genome-wide screening.

Zhou X, Liu KY, Bradley P, Perrimon N, Wong ST.

Med Image Comput Comput Assist Interv. 2005;8(Pt 1):885-92.

PMID:
16685930
[PubMed - indexed for MEDLINE]
18.

Nuclear-labeling index analysis (NLIA), a software package used to perform accurate automation of cell nuclear-labeling index analysis on immunohistochemically stained rat liver samples.

Xu YH, Sattler GL, Edwards H, Pitot HC.

Comput Methods Programs Biomed. 2000 Aug;63(1):55-70.

PMID:
10927155
[PubMed - indexed for MEDLINE]
19.

Editorial: protein systems biology: method, regulation, and network.

Chen Q, Chen M.

Curr Protein Pept Sci. 2014;15(6):519-21.

PMID:
25135673
[PubMed - in process]
20.

Image-based chemical screening.

Carpenter AE.

Nat Chem Biol. 2007 Aug;3(8):461-5. Review.

PMID:
17637778
[PubMed - indexed for MEDLINE]

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