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Results: 1 to 20 of 74

1.

JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions.

Allen JE, Majoros WH, Pertea M, Salzberg SL.

Genome Biol. 2006;7 Suppl 1:S9.1-13. Epub 2006 Aug 7.

PMID:
16925843
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

GENCODE: producing a reference annotation for ENCODE.

Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R.

Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

PMID:
16925838
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.

Stanke M, Tzvetkova A, Morgenstern B.

Genome Biol. 2006;7 Suppl 1:S11.1-8. Epub 2006 Aug 7.

PMID:
16925833
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.

Djebali S, Delaplace F, Roest Crollius H.

Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

PMID:
16925841
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

JIGSAW: integration of multiple sources of evidence for gene prediction.

Allen JE, Salzberg SL.

Bioinformatics. 2005 Sep 15;21(18):3596-603. Epub 2005 Aug 2.

PMID:
16076884
[PubMed - indexed for MEDLINE]
Free Article
6.

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

Arumugam M, Wei C, Brown RH, Brent MR.

Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

PMID:
16925839
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

AceView: a comprehensive cDNA-supported gene and transcripts annotation.

Thierry-Mieg D, Thierry-Mieg J.

Genome Biol. 2006;7 Suppl 1:S12.1-14. Epub 2006 Aug 7.

PMID:
16925834
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Automatic annotation of eukaryotic genes, pseudogenes and promoters.

Solovyev V, Kosarev P, Seledsov I, Vorobyev D.

Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.

PMID:
16925832
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Competition boosts bid to find human genes.

Abbott A.

Nature. 2005 May 12;435(7039):134. No abstract available.

PMID:
15889055
[PubMed - indexed for MEDLINE]
10.

EGASP: the human ENCODE Genome Annotation Assessment Project.

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

PMID:
16925836
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.

Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.

PMID:
16925837
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A general pipeline for the development of anchor markers for comparative genomics in plants.

Fredslund J, Madsen LH, Hougaard BK, Nielsen AM, Bertioli D, Sandal N, Stougaard J, Schauser L.

BMC Genomics. 2006 Aug 14;7:207.

PMID:
16907970
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

EGASP: Introduction.

Reese MG, Guigó R.

Genome Biol. 2006;7 Suppl 1:S1.1-3. Epub 2006 Aug 7. No abstract available.

PMID:
16925831
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Devil in the details.

[No authors listed]

Nature. 2011 Feb 17;470(7334):305-6. doi: 10.1038/470305b. No abstract available.

PMID:
21330998
[PubMed - indexed for MEDLINE]
15.

Shotgun sequence assembly and recent segmental duplications within the human genome.

She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE.

Nature. 2004 Oct 21;431(7011):927-30.

PMID:
15496912
[PubMed - indexed for MEDLINE]
16.

Begin at the beginning: predicting genes with 5' UTRs.

Brown RH, Gross SS, Brent MR.

Genome Res. 2005 May;15(5):742-7.

PMID:
15867435
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The genome browser at UCSC for locating genes, and much more!

Bina M.

Mol Biotechnol. 2008 Mar;38(3):269-75. Epub 2007 Dec 4. Review.

PMID:
18058261
[PubMed - indexed for MEDLINE]
18.

Computational inference of homologous gene structures in the human genome.

Yeh RF, Lim LP, Burge CB.

Genome Res. 2001 May;11(5):803-16.

PMID:
11337476
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

ExonHunter: a comprehensive approach to gene finding.

Brejová B, Brown DG, Li M, Vinar T.

Bioinformatics. 2005 Jun;21 Suppl 1:i57-65.

PMID:
15961499
[PubMed - indexed for MEDLINE]
Free Article
20.

Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.

Flicek P, Brent MR.

Genome Biol. 2006;7 Suppl 1:S8.1-9. Epub 2006 Aug 7.

PMID:
16925842
[PubMed - indexed for MEDLINE]
Free PMC Article

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