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Results: 1 to 20 of 63

1.

UniPep--a database for human N-linked glycosites: a resource for biomarker discovery.

Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R.

Genome Biol. 2006;7(8):R73. Epub 2006 Aug 10.

PMID:
16901351
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A proteome resource of ovarian cancer ascites: integrated proteomic and bioinformatic analyses to identify putative biomarkers.

Gortzak-Uzan L, Ignatchenko A, Evangelou AI, Agochiya M, Brown KA, St Onge P, Kireeva I, Schmitt-Ulms G, Brown TJ, Murphy J, Rosen B, Shaw P, Jurisica I, Kislinger T.

J Proteome Res. 2008 Jan;7(1):339-51. Epub 2007 Dec 13.

PMID:
18076136
[PubMed - indexed for MEDLINE]
3.

BiomarkerDigger: a versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers.

Jeong SK, Kwon MS, Lee EY, Lee HJ, Cho SY, Kim H, Yoo JS, Omenn GS, Aebersold R, Hanash S, Paik YK.

Proteomics. 2009 Jul;9(14):3729-40. doi: 10.1002/pmic.200800593.

PMID:
19639590
[PubMed - indexed for MEDLINE]
4.

Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.

Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H.

J Proteome Res. 2009 Feb;8(2):651-61. doi: 10.1021/pr8008012.

PMID:
19159218
[PubMed - indexed for MEDLINE]
5.

Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.

Whiteaker JR, Zhang H, Zhao L, Wang P, Kelly-Spratt KS, Ivey RG, Piening BD, Feng LC, Kasarda E, Gurley KE, Eng JK, Chodosh LA, Kemp CJ, McIntosh MW, Paulovich AG.

J Proteome Res. 2007 Oct;6(10):3962-75. Epub 2007 Aug 21.

PMID:
17711321
[PubMed - indexed for MEDLINE]
6.

Biomarker validation in blood specimens by selected reaction monitoring mass spectrometry of N-glycosites.

Ossola R, Schiess R, Picotti P, Rinner O, Reiter L, Aebersold R.

Methods Mol Biol. 2011;728:179-94. doi: 10.1007/978-1-61779-068-3_11.

PMID:
21468948
[PubMed - indexed for MEDLINE]
7.

Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics.

Phan JH, Quo CF, Wang MD.

Prog Brain Res. 2006;158:83-108. Review.

PMID:
17027692
[PubMed - indexed for MEDLINE]
8.

PCHM: A bioinformatic resource for high-throughput human mitochondrial proteome searching and comparison.

Kim T, Kim E, Park SJ, Joo H.

Comput Biol Med. 2009 Aug;39(8):689-96. doi: 10.1016/j.compbiomed.2009.05.006. Epub 2009 Jun 21.

PMID:
19541297
[PubMed - indexed for MEDLINE]
9.

Mass spectrometric detection of tissue proteins in plasma.

Zhang H, Liu AY, Loriaux P, Wollscheid B, Zhou Y, Watts JD, Aebersold R.

Mol Cell Proteomics. 2007 Jan;6(1):64-71. Epub 2006 Oct 9.

PMID:
17030953
[PubMed - indexed for MEDLINE]
Free Article
10.

DengueInfo: A web portal to dengue information resources.

Schreiber MJ, Ong SH, Holland RC, Hibberd ML, Vasudevan SG, Mitchell WP, Holmes EC.

Infect Genet Evol. 2007 Jul;7(4):540-1. Epub 2007 Feb 11.

PMID:
17350350
[PubMed - indexed for MEDLINE]
11.

Novel breast cancer biomarkers identified by integrative proteomic and gene expression mapping.

Ou K, Yu K, Kesuma D, Hooi M, Huang N, Chen W, Lee SY, Goh XP, Tan LK, Liu J, Soon SY, Bin Abdul Rashid S, Putti TC, Jikuya H, Ichikawa T, Nishimura O, Salto-Tellez M, Tan P.

J Proteome Res. 2008 Apr;7(4):1518-28. doi: 10.1021/pr700820g. Epub 2008 Mar 5.

PMID:
18318472
[PubMed - indexed for MEDLINE]
12.

e-Fungi: a data resource for comparative analysis of fungal genomes.

Hedeler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton NW.

BMC Genomics. 2007 Nov 20;8:426.

PMID:
18028535
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Exploring the sialiome using titanium dioxide chromatography and mass spectrometry.

Larsen MR, Jensen SS, Jakobsen LA, Heegaard NH.

Mol Cell Proteomics. 2007 Oct;6(10):1778-87. Epub 2007 Jul 9.

PMID:
17623646
[PubMed - indexed for MEDLINE]
Free Article
14.

Mapping tissue-specific expression of extracellular proteins using systematic glycoproteomic analysis of different mouse tissues.

Tian Y, Kelly-Spratt KS, Kemp CJ, Zhang H.

J Proteome Res. 2010 Nov 5;9(11):5837-47. doi: 10.1021/pr1006075. Epub 2010 Oct 14.

PMID:
20828161
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Discovering sequence motifs.

Bailey TL.

Methods Mol Biol. 2008;452:231-51. doi: 10.1007/978-1-60327-159-2_12. Review.

PMID:
18566768
[PubMed - indexed for MEDLINE]
16.

genoBASE pylori: a genotype search tool and database of the human gastric pathogen Helicobacter pylori.

Ahmed N, Majeed AA, Ahmed I, Hussain MA, Alvi A, Devi SM, Rizwan M, Ranjan A, Sechi LA, M├ęgraud F.

Infect Genet Evol. 2007 Jul;7(4):463-8. Epub 2007 Jan 26.

PMID:
17320487
[PubMed - indexed for MEDLINE]
17.

Plasma-derived microparticles for biomarker discovery.

Smalley DM, Ley K.

Clin Lab. 2008;54(3-4):67-79. Review.

PMID:
18630736
[PubMed - indexed for MEDLINE]
18.

Development of high-throughput mass spectrometry-based approaches for cancer biomarker discovery and implementation.

Hood BL, Stewart NA, Conrads TP.

Clin Lab Med. 2009 Mar;29(1):115-38. doi: 10.1016/j.cll.2009.01.007. Review.

PMID:
19389555
[PubMed - indexed for MEDLINE]
19.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

PMID:
19087345
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Global and targeted quantitative proteomics for biomarker discovery.

Veenstra TD.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Feb 15;847(1):3-11. Epub 2006 Oct 4. Review.

PMID:
17023222
[PubMed - indexed for MEDLINE]

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