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Results: 1 to 20 of 116

1.

Evolution of candidate transcriptional regulatory motifs since the human-chimpanzee divergence.

Donaldson IJ, Göttgens B.

Genome Biol. 2006;7(6):R52.

PMID:
16808854
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories.

Shankar R, Chaurasia A, Ghosh B, Chekmenev D, Cheremushkin E, Kel A, Mukerji M.

Mol Genet Genomics. 2007 Apr;277(4):441-55. Epub 2007 Mar 9.

PMID:
17375324
[PubMed - indexed for MEDLINE]
4.

Chimpanzee, orangutan, mouse, and human cell cycle promoters exempt CCAAT boxes and CHR elements from interspecies differences.

Müller GA, Heissig F, Engeland K.

Mol Biol Evol. 2007 Mar;24(3):814-26. Epub 2007 Jan 6.

PMID:
17205977
[PubMed - indexed for MEDLINE]
Free Article
5.

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.

Dermitzakis ET, Clark AG.

Mol Biol Evol. 2002 Jul;19(7):1114-21.

PMID:
12082130
[PubMed - indexed for MEDLINE]
Free Article
6.

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE.

PLoS Genet. 2012 Jun;8(6):e1002789. doi: 10.1371/journal.pgen.1002789. Epub 2012 Jun 28.

PMID:
22761590
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome.

De S, Teichmann SA, Babu MM.

Genome Res. 2009 May;19(5):785-94. doi: 10.1101/gr.086165.108. Epub 2009 Feb 19.

PMID:
19233772
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.

BMC Genomics. 2008 May 17;9:226. doi: 10.1186/1471-2164-9-226.

PMID:
18485226
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The evolutionary history of human and chimpanzee Y-chromosome gene loss.

Perry GH, Tito RY, Verrelli BC.

Mol Biol Evol. 2007 Mar;24(3):853-9. Epub 2007 Jan 11.

PMID:
17218643
[PubMed - indexed for MEDLINE]
Free Article
10.

Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence.

Torgerson DG, Boyko AR, Hernandez RD, Indap A, Hu X, White TJ, Sninsky JJ, Cargill M, Adams MD, Bustamante CD, Clark AG.

PLoS Genet. 2009 Aug;5(8):e1000592. doi: 10.1371/journal.pgen.1000592. Epub 2009 Aug 7.

PMID:
19662163
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Selective constraints in experimentally defined primate regulatory regions.

Gaffney DJ, Blekhman R, Majewski J.

PLoS Genet. 2008 Aug 15;4(8):e1000157. doi: 10.1371/journal.pgen.1000157.

PMID:
18704158
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Frequent gain and loss of functional transcription factor binding sites.

Doniger SW, Fay JC.

PLoS Comput Biol. 2007 May;3(5):e99. Epub 2007 Apr 19. Erratum in: PLoS Comput Biol. 2009 Feb;5(2). doi: 10.1371/annotation/363b6074-caec-4238-b88f-acbf45de498f.

PMID:
17530920
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Many human accelerated regions are developmental enhancers.

Capra JA, Erwin GD, McKinsey G, Rubenstein JL, Pollard KS.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130025. doi: 10.1098/rstb.2013.0025. Print 2013 Dec 19.

PMID:
24218637
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Accelerated evolution of conserved noncoding sequences in humans.

Prabhakar S, Noonan JP, Pääbo S, Rubin EM.

Science. 2006 Nov 3;314(5800):786.

PMID:
17082449
[PubMed - indexed for MEDLINE]
Free Article
15.

[A comparative analysis of regulatory regions of the transthyretin gene in the mouse, human, and chimpanzee genomes].

Nadezhdin EV, Vinogradova TV, Sverdlov ED.

Bioorg Khim. 2004 Jul-Aug;30(4):383-8. Russian.

PMID:
15469012
[PubMed - indexed for MEDLINE]
16.

Functional conservation of Rel binding sites in drosophilid genomes.

Copley RR, Totrov M, Linnell J, Field S, Ragoussis J, Udalova IA.

Genome Res. 2007 Sep;17(9):1327-35.

PMID:
17785540
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative genomic analysis of human and chimpanzee proteases.

Puente XS, Gutiérrez-Fernández A, Ordóñez GR, Hillier LW, López-Otín C.

Genomics. 2005 Dec;86(6):638-47. Epub 2005 Sep 12.

PMID:
16162398
[PubMed - indexed for MEDLINE]
Free Article
18.

Position specific variation in the rate of evolution in transcription factor binding sites.

Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB.

BMC Evol Biol. 2003 Aug 28;3:19. Epub 2003 Aug 28.

PMID:
12946282
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide.

Kumar P, Yadav VK, Baral A, Kumar P, Saha D, Chowdhury S.

Nucleic Acids Res. 2011 Oct;39(18):8005-16. doi: 10.1093/nar/gkr536. Epub 2011 Jul 4.

PMID:
21729868
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Divergent microsatellite evolution in the human and chimpanzee lineages.

Gáspári Z, Ortutay C, Tóth G.

FEBS Lett. 2007 May 29;581(13):2523-6. Epub 2007 May 4.

PMID:
17498704
[PubMed - indexed for MEDLINE]
Free Article

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