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Results: 1 to 20 of 76

1.

A classification based framework for quantitative description of large-scale microarray data.

Sangurdekar DP, Srienc F, Khodursky AB.

Genome Biol. 2006;7(4):R32. Epub 2006 Apr 20.

PMID:
16626502
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A genome-wide 20 K citrus microarray for gene expression analysis.

Martinez-Godoy MA, Mauri N, Juarez J, Marques MC, Santiago J, Forment J, Gadea J.

BMC Genomics. 2008 Jul 3;9:318. doi: 10.1186/1471-2164-9-318.

PMID:
18598343
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations.

Zare H, Sangurdekar D, Srivastava P, Kaveh M, Khodursky A.

BMC Syst Biol. 2009 Apr 14;3:39. doi: 10.1186/1752-0509-3-39.

PMID:
19366454
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Construction, visualisation, and clustering of transcription networks from microarray expression data.

Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ.

PLoS Comput Biol. 2007 Oct;3(10):2032-42.

PMID:
17967053
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416.

PMID:
18837990
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Combining microarrays and genetic analysis.

Alberts R, Fu J, Swertz MA, Lubbers LA, Albers CJ, Jansen RC.

Brief Bioinform. 2005 Jun;6(2):135-45.

PMID:
15975223
[PubMed - indexed for MEDLINE]
Free Article
7.

Genome-wide localization of mobile elements: experimental, statistical and biological considerations.

Martinez-Vaz BM, Xie Y, Pan W, Khodursky AB.

BMC Genomics. 2005 Jun 1;6:81.

PMID:
15929794
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

BMC Bioinformatics. 2007 Aug 14;8:299.

PMID:
17697349
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Significance of gene ranking for classification of microarray samples.

Zhang C, Lu X, Zhang X.

IEEE/ACM Trans Comput Biol Bioinform. 2006 Jul-Sep;3(3):312-20.

PMID:
17048468
[PubMed - indexed for MEDLINE]
10.

Class discovery from gene expression data based on perturbation and cluster ensemble.

Yu Z, Wong HS.

IEEE Trans Nanobioscience. 2009 Jun;8(2):147-60. doi: 10.1109/TNB.2009.2023321. Epub 2009 Jun 2.

PMID:
19497836
[PubMed - indexed for MEDLINE]
11.

Screening of target-specific stress-responsive genes for the development of cell-based biosensors using a DNA microarray.

Kim BC, Youn CH, Ahn JM, Gu MB.

Anal Chem. 2005 Dec 15;77(24):8020-6.

PMID:
16351151
[PubMed - indexed for MEDLINE]
12.

The effect of GeneChip gene definitions on the microarray study of cancers.

Lu X, Zhang X.

Bioessays. 2006 Jul;28(7):739-46.

PMID:
16850407
[PubMed - indexed for MEDLINE]
13.

Tumor classification ranking from microarray data.

Hewett R, Kijsanayothin P.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S21. doi: 10.1186/1471-2164-9-S2-S21.

PMID:
18831787
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A new method for class prediction based on signed-rank algorithms applied to Affymetrix microarray experiments.

Rème T, Hose D, De Vos J, Vassal A, Poulain PO, Pantesco V, Goldschmidt H, Klein B.

BMC Bioinformatics. 2008 Jan 11;9:16. doi: 10.1186/1471-2105-9-16.

PMID:
18190711
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The condition-dependent transcriptional network in Escherichia coli.

Lemmens K, De Bie T, Dhollander T, Monsieurs P, De Moor B, Collado-Vides J, Engelen K, Marchal K.

Ann N Y Acad Sci. 2009 Mar;1158:29-35. doi: 10.1111/j.1749-6632.2008.03746.x.

PMID:
19348629
[PubMed - indexed for MEDLINE]
16.

Graph-based consensus clustering for class discovery from gene expression data.

Yu Z, Wong HS, Wang H.

Bioinformatics. 2007 Nov 1;23(21):2888-96. Epub 2007 Sep 14.

PMID:
17872912
[PubMed - indexed for MEDLINE]
Free Article
17.

Human gene expression sensitivity according to large scale meta-analysis.

Hao P, Zheng S, Ping J, Tu K, Gieger C, Wang-Sattler R, Zhong Y, Li Y.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S56. doi: 10.1186/1471-2105-10-S1-S56.

PMID:
19208159
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Microarray expression profiling: capturing a genome-wide portrait of the transcriptome.

Conway T, Schoolnik GK.

Mol Microbiol. 2003 Feb;47(4):879-89. Review.

PMID:
12581346
[PubMed - indexed for MEDLINE]
19.

Molecular networks in microarray analysis.

Sivachenko AY, Yuryev A, Daraselia N, Mazo I.

J Bioinform Comput Biol. 2007 Apr;5(2B):429-56. Review.

PMID:
17636854
[PubMed - indexed for MEDLINE]
20.

Attribute clustering for grouping, selection, and classification of gene expression data.

Au WH, Chan KC, Wong AK, Wang Y.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Apr-Jun;2(2):83-101. Erratum in: IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):157.

PMID:
17044174
[PubMed - indexed for MEDLINE]

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