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Results: 1 to 20 of 135

1.

Discovery of biological networks from diverse functional genomic data.

Myers CL, Robson D, Wible A, Hibbs MA, Chiriac C, Theesfeld CL, Dolinski K, Troyanskaya OG.

Genome Biol. 2005;6(13):R114. Epub 2005 Dec 19.

PMID:
16420673
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Cdc37 regulation of the kinome: when to hold 'em and when to fold 'em.

Karnitz LM, Felts SJ.

Sci STKE. 2007 May 8;2007(385):pe22. Review.

PMID:
17488976
[PubMed - indexed for MEDLINE]
3.

Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches.

McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, Frydman J.

Cell. 2007 Oct 5;131(1):121-35.

PMID:
17923092
[PubMed - indexed for MEDLINE]
Free Article
4.

A probabilistic functional network of yeast genes.

Lee I, Date SV, Adai AT, Marcotte EM.

Science. 2004 Nov 26;306(5701):1555-8.

PMID:
15567862
[PubMed - indexed for MEDLINE]
Free Article
5.

The Hsp90/Cdc37p chaperone system is a determinant of molybdate resistance in Saccharomyces cerevisiae.

Millson SH, Nuttall JM, Mollapour M, Piper PW.

Yeast. 2009 Jun;26(6):339-47. doi: 10.1002/yea.1670.

PMID:
19399909
[PubMed - indexed for MEDLINE]
6.

A genomewide functional network for the laboratory mouse.

Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000165. doi: 10.1371/journal.pcbi.1000165.

PMID:
18818725
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Social behavior of the yeast protein-protein interaction network.

Seshasayee AS.

In Silico Biol. 2006;6(1-2):127-30.

PMID:
16789919
[PubMed - indexed for MEDLINE]
8.

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M.

Science. 2003 Oct 17;302(5644):449-53.

PMID:
14564010
[PubMed - indexed for MEDLINE]
Free Article
9.

A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).

Troyanskaya OG, Dolinski K, Owen AB, Altman RB, Botstein D.

Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8348-53. Epub 2003 Jun 25.

PMID:
12826619
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions.

van Noort V, Snel B, Huynen MA.

Genome Biol. 2007;8(9):R197.

PMID:
17880677
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M.

J Biol. 2006;5(4):11. Epub 2006 Jun 8.

PMID:
16762047
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification of functional modules in a PPI network by clique percolation clustering.

Zhang S, Ning X, Zhang XS.

Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.

PMID:
17098476
[PubMed - indexed for MEDLINE]
13.

Discovering biological networks from diverse functional genomic data.

Myers CL, Chiriac C, Troyanskaya OG.

Methods Mol Biol. 2009;563:157-75. doi: 10.1007/978-1-60761-175-2_9.

PMID:
19597785
[PubMed - indexed for MEDLINE]
14.

Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.

Nariai N, Kim S, Imoto S, Miyano S.

Pac Symp Biocomput. 2004:336-47.

PMID:
14992515
[PubMed - indexed for MEDLINE]
15.

Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes.

McGary KL, Lee I, Marcotte EM.

Genome Biol. 2007;8(12):R258.

PMID:
18053250
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An E-MAP of the ER.

Conibear E.

Cell. 2005 Nov 4;123(3):366-8.

PMID:
16269327
[PubMed - indexed for MEDLINE]
Free Article
17.

Inferring network interactions within a cell.

Carter GW.

Brief Bioinform. 2005 Dec;6(4):380-9. Review.

PMID:
16420736
[PubMed - indexed for MEDLINE]
Free Article
18.

Functional genomics and proteomics: charting a multidimensional map of the yeast cell.

Bader GD, Heilbut A, Andrews B, Tyers M, Hughes T, Boone C.

Trends Cell Biol. 2003 Jul;13(7):344-56. Review.

PMID:
12837605
[PubMed - indexed for MEDLINE]
19.

Cdc37p is required for stress-induced high-osmolarity glycerol and protein kinase C mitogen-activated protein kinase pathway functionality by interaction with Hog1p and Slt2p (Mpk1p).

Hawle P, Horst D, Bebelman JP, Yang XX, Siderius M, van der Vies SM.

Eukaryot Cell. 2007 Mar;6(3):521-32. Epub 2007 Jan 12.

PMID:
17220467
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Bayesian data integration: a functional perspective.

Huttenhower C, Troyanskaya OG.

Comput Syst Bioinformatics Conf. 2006:341-51.

PMID:
17369653
[PubMed - indexed for MEDLINE]
Free Article

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