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Results: 1 to 20 of 159

1.

A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks.

Reece-Hoyes JS, Deplancke B, Shingles J, Grove CA, Hope IA, Walhout AJ.

Genome Biol. 2005;6(13):R110. Epub 2005 Dec 30.

PMID:
16420670
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A gene-centered C. elegans protein-DNA interaction network.

Deplancke B, Mukhopadhyay A, Ao W, Elewa AM, Grove CA, Martinez NJ, Sequerra R, Doucette-Stamm L, Reece-Hoyes JS, Hope IA, Tissenbaum HA, Mango SE, Walhout AJ.

Cell. 2006 Jun 16;125(6):1193-205.

PMID:
16777607
[PubMed - indexed for MEDLINE]
Free Article
3.

EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression.

Barrasa MI, Vaglio P, Cavasino F, Jacotot L, Walhout AJ.

BMC Genomics. 2007 Jan 18;8:21.

PMID:
17233892
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution.

Haerty W, Artieri C, Khezri N, Singh RS, Gupta BP.

BMC Genomics. 2008 Aug 27;9:399. doi: 10.1186/1471-2164-9-399.

PMID:
18752680
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Synergistic activation of transcription by UNC-86 and MEC-3 in Caenorhabditis elegans embryo extracts.

Lichtsteiner S, Tjian R.

EMBO J. 1995 Aug 15;14(16):3937-45.

PMID:
7664734
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Exploring transcriptional regulatory networks in the worm.

Farkas IJ, Beg QK, Oltvai ZN.

Cell. 2006 Jun 16;125(6):1032-4.

PMID:
16777593
[PubMed - indexed for MEDLINE]
Free Article
7.

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions.

Wei C, Lamesch P, Arumugam M, Rosenberg J, Hu P, Vidal M, Brent MR.

Genome Res. 2005 Apr;15(4):577-82.

PMID:
15805498
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Protein interaction mapping in C. elegans using proteins involved in vulval development.

Walhout AJ, Sordella R, Lu X, Hartley JL, Temple GF, Brasch MA, Thierry-Mieg N, Vidal M.

Science. 2000 Jan 7;287(5450):116-22.

PMID:
10615043
[PubMed - indexed for MEDLINE]
Free Article
9.

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.

Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y.

Mol Biosyst. 2009 Dec;5(12):1817-30. doi: 10.1039/B908108a. Epub 2009 Jul 17.

PMID:
19763340
[PubMed - indexed for MEDLINE]
10.

Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network.

Vermeirssen V, Barrasa MI, Hidalgo CA, Babon JA, Sequerra R, Doucette-Stamm L, Barabási AL, Walhout AJ.

Genome Res. 2007 Jul;17(7):1061-71. Epub 2007 May 18.

PMID:
17513831
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Combined functional genomic maps of the C. elegans DNA damage response.

Boulton SJ, Gartner A, Reboul J, Vaglio P, Dyson N, Hill DE, Vidal M.

Science. 2002 Jan 4;295(5552):127-31.

PMID:
11778048
[PubMed - indexed for MEDLINE]
Free Article
12.

Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods.

GuhaThakurta D, Palomar L, Stormo GD, Tedesco P, Johnson TE, Walker DW, Lithgow G, Kim S, Link CD.

Genome Res. 2002 May;12(5):701-12. Erratum in: Genome Res 2002 Aug;12(8):1301.

PMID:
11997337
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Gene-centered regulatory network mapping.

Walhout AJ.

Methods Cell Biol. 2011;106:271-88. doi: 10.1016/B978-0-12-544172-8.00010-4. Review.

PMID:
22118281
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, Welchman DP, Zipperlen P, Ahringer J.

Nature. 2003 Jan 16;421(6920):231-7.

PMID:
12529635
[PubMed - indexed for MEDLINE]
15.

A map of the interactome network of the metazoan C. elegans.

Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M.

Science. 2004 Jan 23;303(5657):540-3. Epub 2004 Jan 2.

PMID:
14704431
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions.

Van Nostrand EL, Kim SK.

Genome Res. 2013 Jun;23(6):941-53. doi: 10.1101/gr.152876.112. Epub 2013 Mar 26.

PMID:
23531767
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions.

Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, Vidal M.

Genome Res. 2004 Oct;14(10B):2064-9.

PMID:
15489327
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns.

Reece-Hoyes JS, Shingles J, Dupuy D, Grove CA, Walhout AJ, Vidal M, Hope IA.

BMC Genomics. 2007 Jan 23;8:27.

PMID:
17244357
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The taxonomy of developmental control in Caenorhabditis elegans.

Ruvkun G, Hobert O.

Science. 1998 Dec 11;282(5396):2033-41. Review.

PMID:
9851920
[PubMed - indexed for MEDLINE]
20.

Networks in Caenorhabditis elegans.

Gunsalus KC, Rhrissorrakrai K.

Curr Opin Genet Dev. 2011 Dec;21(6):787-98. doi: 10.1016/j.gde.2011.10.003. Epub 2011 Nov 4. Review.

PMID:
22054717
[PubMed - indexed for MEDLINE]

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