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Results: 1 to 20 of 103

1.

The design of transcription-factor binding sites is affected by combinatorial regulation.

Bilu Y, Barkai N.

Genome Biol. 2005;6(12):R103. Epub 2005 Dec 2.

PMID:
16356266
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evidence of association between nucleosome occupancy and the evolution of transcription factor binding sites in yeast.

Swamy KB, Chu WY, Wang CY, Tsai HK, Wang D.

BMC Evol Biol. 2011 May 31;11:150. doi: 10.1186/1471-2148-11-150.

PMID:
21627806
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

TATA-binding protein activates transcription when upstream of a GCN4-binding site in a novel yeast promoter.

Brandl CJ, Martens JA, Liaw PC, Furlanetto AM, Wobbe CR.

J Biol Chem. 1992 Oct 15;267(29):20943-52.

PMID:
1400410
[PubMed - indexed for MEDLINE]
Free Article
4.

Analysis of combinatorial cis-regulation in synthetic and genomic promoters.

Gertz J, Siggia ED, Cohen BA.

Nature. 2009 Jan 8;457(7226):215-8. doi: 10.1038/nature07521. Epub 2008 Nov 23.

PMID:
19029883
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

cis- and trans-acting regulatory elements of the yeast URA3 promoter.

Roy A, Exinger F, Losson R.

Mol Cell Biol. 1990 Oct;10(10):5257-70.

PMID:
2204810
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters.

Erb I, van Nimwegen E.

PLoS One. 2011;6(9):e24279. doi: 10.1371/journal.pone.0024279. Epub 2011 Sep 9.

PMID:
21931670
[PubMed - indexed for MEDLINE]
Free PMC Article
7.
8.

Expression of the INO2 regulatory gene of Saccharomyces cerevisiae is controlled by positive and negative promoter elements and an upstream open reading frame.

Eiznhamer DA, Ashburner BP, Jackson JC, Gardenour KR, Lopes JM.

Mol Microbiol. 2001 Mar;39(5):1395-405.

PMID:
11251853
[PubMed - indexed for MEDLINE]
9.
10.

Identifying combinatorial regulation of transcription factors and binding motifs.

Kato M, Hata N, Banerjee N, Futcher B, Zhang MQ.

Genome Biol. 2004;5(8):R56. Epub 2004 Jul 28.

PMID:
15287978
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Schlecht U, Erb I, Demougin P, Robine N, Borde V, van Nimwegen E, Nicolas A, Primig M.

Mol Biol Cell. 2008 May;19(5):2193-207. doi: 10.1091/mbc.E07-12-1242. Epub 2008 Feb 27.

PMID:
18305101
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A global view of the selection forces in the evolution of yeast cis-regulation.

Tanay A, Gat-Viks I, Shamir R.

Genome Res. 2004 May;14(5):829-34.

PMID:
15123582
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

GCN4p activation of the yeast TRP3 gene is enhanced by ABF1p and uses a suboptimal TATA element.

Martens JA, Brandl CJ.

J Biol Chem. 1994 Jun 3;269(22):15661-7.

PMID:
8195216
[PubMed - indexed for MEDLINE]
Free Article
14.

Participation of the yeast activator Abf1 in meiosis-specific expression of the HOP1 gene.

Gailus-Durner V, Xie J, Chintamaneni C, Vershon AK.

Mol Cell Biol. 1996 Jun;16(6):2777-86.

PMID:
8649386
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Expression studies and promoter analysis of the nuclear gene for mitochondrial transcription factor 1 (MTF1) in yeast.

Jan PS, Stein T, Hehl S, Lisowsky T.

Curr Genet. 1999 Aug;36(1-2):37-48.

PMID:
10447593
[PubMed - indexed for MEDLINE]
16.

Genome-wide co-occurrence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae.

Sudarsanam P, Pilpel Y, Church GM.

Genome Res. 2002 Nov;12(11):1723-31.

PMID:
12421759
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene.

Lascaris RF, Groot E, Hoen PB, Mager WH, Planta RJ.

Nucleic Acids Res. 2000 Mar 15;28(6):1390-6.

PMID:
10684934
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

TATA is a modular component of synthetic promoters.

Mogno I, Vallania F, Mitra RD, Cohen BA.

Genome Res. 2010 Oct;20(10):1391-7. doi: 10.1101/gr.106732.110. Epub 2010 Jul 13.

PMID:
20627890
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Positive autoregulation of the yeast transcription factor Pdr3p, which is involved in control of drug resistance.

Delahodde A, Delaveau T, Jacq C.

Mol Cell Biol. 1995 Aug;15(8):4043-51.

PMID:
7623800
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Identification of target sites of the alpha2-Mcm1 repressor complex in the yeast genome.

Zhong H, McCord R, Vershon AK.

Genome Res. 1999 Nov;9(11):1040-7.

PMID:
10568744
[PubMed - indexed for MEDLINE]
Free Article

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