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Results: 1 to 20 of 121

1.

Text-mining and information-retrieval services for molecular biology.

Krallinger M, Valencia A.

Genome Biol. 2005;6(7):224. Epub 2005 Jun 28.

PMID:
15998455
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Text-mining approaches in molecular biology and biomedicine.

Krallinger M, Erhardt RA, Valencia A.

Drug Discov Today. 2005 Mar 15;10(6):439-45. Review.

PMID:
15808823
[PubMed - indexed for MEDLINE]
3.

A critical assessment of text mining methods in molecular biology. Proceedings of a workshop. March 28-31, 2004. Granada, Spain.

[No authors listed]

BMC Bioinformatics. 2005;6 Suppl 1:S1-23. No abstract available.

PMID:
16468169
[PubMed - indexed for MEDLINE]
Free Article
4.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

PMID:
15960829
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Structural mining of molecular biology data.

Cook DJ, Holder LB, Su S, Maglothin R, Jonyer I.

IEEE Eng Med Biol Mag. 2001 Jul-Aug;20(4):67-74. No abstract available.

PMID:
11494772
[PubMed - indexed for MEDLINE]
6.

BioNumbers--the database of key numbers in molecular and cell biology.

Milo R, Jorgensen P, Moran U, Weber G, Springer M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D750-3. doi: 10.1093/nar/gkp889. Epub 2009 Oct 23.

PMID:
19854939
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.

Roos M, Marshall MS, Gibson AP, Schuemie M, Meij E, Katrenko S, van Hage WR, Krommydas K, Adriaans PW.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S9. doi: 10.1186/1471-2105-10-S10-S9.

PMID:
19796406
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Text-based knowledge discovery: search and mining of life-sciences documents.

Mack R, Hehenberger M.

Drug Discov Today. 2002 Jun 1;7(11):S89-98. Review. Erratum in: Drug Discov Today. 2002 Sep;7(17):889.

PMID:
12047886
[PubMed - indexed for MEDLINE]
9.

Zsyntax: a formal language for molecular biology with projected applications in text mining and biological prediction.

Boniolo G, D'Agostino M, Di Fiore PP.

PLoS One. 2010 Mar 3;5(3):e9511. doi: 10.1371/journal.pone.0009511.

PMID:
20209084
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Text mining and protein annotations: the construction and use of protein description sentences.

Krallinger M, Malik R, Valencia A.

Genome Inform. 2006;17(2):121-30.

PMID:
17503385
[PubMed - indexed for MEDLINE]
11.

Text mining.

Clegg AB, Shepherd AJ.

Methods Mol Biol. 2008;453:471-91. doi: 10.1007/978-1-60327-429-6_25.

PMID:
18712320
[PubMed - indexed for MEDLINE]
12.

The discovery net system for high throughput bioinformatics.

Rowe A, Kalaitzopoulos D, Osmond M, Ghanem M, Guo Y.

Bioinformatics. 2003;19 Suppl 1:i225-31.

PMID:
12855463
[PubMed - indexed for MEDLINE]
Free Article
13.

HLungDB: an integrated database of human lung cancer research.

Wang L, Xiong Y, Sun Y, Fang Z, Li L, Ji H, Shi T.

Nucleic Acids Res. 2010 Jan;38(Database issue):D665-9. doi: 10.1093/nar/gkp945. Epub 2009 Nov 9.

PMID:
19900972
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

From biological databases to platforms for biomedical discovery.

Navarro JD, Niranjan V, Peri S, Jonnalagadda CK, Pandey A.

Trends Biotechnol. 2003 Jun;21(6):263-8.

PMID:
12788546
[PubMed - indexed for MEDLINE]
15.

Identification of motifs in protein sequences.

Sonnhammer EL, Wolfsberg TG.

Curr Protoc Cell Biol. 2001 May;Appendix 1:Appendix 1C. doi: 10.1002/0471143030.cba01cs00. Review.

PMID:
18228275
[PubMed - indexed for MEDLINE]
16.

Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

Krallinger M, Valencia A, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S8. doi: 10.1186/gb-2008-9-s2-s8. Epub 2008 Sep 1. Review.

PMID:
18834499
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

Winnenburg R, W├Ąchter T, Plake C, Doms A, Schroeder M.

Brief Bioinform. 2008 Nov;9(6):466-78. doi: 10.1093/bib/bbn043. Epub 2008 Dec 6. Review.

PMID:
19060303
[PubMed - indexed for MEDLINE]
Free Article
18.

The NCBI BioSystems database.

Geer LY, Marchler-Bauer A, Geer RC, Han L, He J, He S, Liu C, Shi W, Bryant SH.

Nucleic Acids Res. 2010 Jan;38(Database issue):D492-6. doi: 10.1093/nar/gkp858. Epub 2009 Oct 23.

PMID:
19854944
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Sequence databases: integrated information retrieval and data submission.

Weisemann JM, Boguski MS, Ouellette BF.

Curr Protoc Mol Biol. 2001 May;Chapter 19:Unit 19.2. doi: 10.1002/0471142727.mb1902s51.

PMID:
18265176
[PubMed - indexed for MEDLINE]
20.

Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry.

Berkholz DS, Krenesky PB, Davidson JR, Karplus PA.

Nucleic Acids Res. 2010 Jan;38(Database issue):D320-5. doi: 10.1093/nar/gkp1013. Epub 2009 Nov 11.

PMID:
19906726
[PubMed - indexed for MEDLINE]
Free PMC Article

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